View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14811_high_3 (Length: 219)
Name: NF14811_high_3
Description: NF14811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14811_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 6916020 - 6916174
Alignment:
| Q |
34 |
aatacttcaaacaccaatttcagcccattaattaaactccataatcagattcacaagtaaaacagaggatatctttgtgcagtgtcatgtcaagtagcaa |
133 |
Q |
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| T |
6916020 |
aatacttcaaacaccaatttcagcccattaattaaactccataatcagattcacaagtaaaacagaggatatctttgtgcagtgtcatgtcaagtagcaa |
6916119 |
T |
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| Q |
134 |
caacaaacgcacactattgttgacaagtaaaaccgtattcttttagttcatatct |
188 |
Q |
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| T |
6916120 |
caacaaacgcacactattgttgacaagtaaaaccgtattctttgagttcatatct |
6916174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 6916401 - 6916453
Alignment:
| Q |
37 |
acttcaaacaccaatttcagcccattaattaaactccataatcagattcacaa |
89 |
Q |
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| T |
6916401 |
acttcaaacaccaattttagctcattaatcaaactccataattacattcacaa |
6916453 |
T |
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