View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14811_low_2 (Length: 353)
Name: NF14811_low_2
Description: NF14811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14811_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 36492932 - 36492594
Alignment:
| Q |
1 |
acattactatggaggtggttctcacggtggaggtggttctcaccatggtggaggtggttgccattactattgccatggccattgctgctcacatgctgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36492932 |
acattactatggaggtggttctcacggtggaggtggttctcaccatggtggaggtggttgccattactattgccatggccattgctgctcacatgctgaa |
36492833 |
T |
|
| Q |
101 |
tttgttgccgtgcaagctgaggacaaaactcagaattgatcataatgctatgatcatgttatgatgcactctttcttaataataaatttcatgaataaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36492832 |
tttgttgccgtgcaagctgaggacaaaactcagaattgatcataatgctatgatcatgttatgatgcactctttcttaataataaatttcatgaataaat |
36492733 |
T |
|
| Q |
201 |
aatgtttgtgagttgatcaaaaaaggcatgcatagatagacatcaatctcagttgctgtcatctattttgtcactatatagtaaagatattccaggagtg |
300 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36492732 |
aatgtttgtgagttgataaaaaatggcatgcatagatagacatcaatctcagttgctgtcatctatcttgtcactatatagtaaagatattccaggagtg |
36492633 |
T |
|
| Q |
301 |
aaaatcatgtataaatttgcatcaatctatgtatctgtg |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
36492632 |
aaaatcatgtataaatttgcatcaatctatgtatctgtg |
36492594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 42 - 224
Target Start/End: Complemental strand, 36475924 - 36475745
Alignment:
| Q |
42 |
accatggtggaggtggttgccattactattgccatggccattgctgctcacatgctgaatttgttgccgtgcaagctgaggacaaaactcagaattgatc |
141 |
Q |
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| T |
36475924 |
accacggtggaggtggttgccaataccattgccatggcaggtgctgctcgcatgctgaatttgttgccatgcaagctaaggacaatactcaaaactgatc |
36475825 |
T |
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| Q |
142 |
ataatgctatgatcatgttatgatgcactctttcttaataataaatttcatgaataaataatgtttgtgagttgatcaaaaaa |
224 |
Q |
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| T |
36475824 |
ataatgctatgatcatg-catgatgcactctttc-tagtactaaattccatgaataaataatg-ttgtgtgttgatcaaaaaa |
36475745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 36493138 - 36493014
Alignment:
| Q |
2 |
cattactatggaggtggttctcac---ggtggaggtggttctcaccatggtggaggtggttgccattactattgccatggccattgctgctcacatgctg |
98 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
36493138 |
cattactatggaggtggttctcaccacggtggaggtggttctcaccacggtggaggtggttgtcattactattgccatggccattgctgctcatatgctg |
36493039 |
T |
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| Q |
99 |
aatttgttgccgtgcaagctgagga |
123 |
Q |
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||||||||||||| ||| ||||||| |
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| T |
36493038 |
aatttgttgccgtccaaactgagga |
36493014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 36475714 - 36475639
Alignment:
| Q |
261 |
atctattttgtcactatat--agtaaagatattccaggagtgaaaatcatgtataaatttgcatcaatctatgtat |
334 |
Q |
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|||||| |||||||||||| | || ||||||| || |||| |||||||||||||||||||| |||||||||||| |
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| T |
36475714 |
atctatcttgtcactatatgtaatatagatatttcattagtggaaatcatgtataaatttgcaacaatctatgtat |
36475639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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