View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14811_low_3 (Length: 352)
Name: NF14811_low_3
Description: NF14811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14811_low_3 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 20019886 - 20019972
Alignment:
| Q |
41 |
aaagataccatcacaaactgattcagagcagaaaatgttttgcacctgcatagttgtatcacaatgtggtagcataggtttgtttgg |
127 |
Q |
| |
|
|||||| ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20019886 |
aaagatgccatcacaaactggttcagagaagaaaaagttttgcacctgcatagttgtatcacaatgtggtagcatagggttgtttgg |
20019972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 20000724 - 20000804
Alignment:
| Q |
47 |
accatcacaaactgattcagagcagaaaatgttttgcacctgcatagttgtatcacaatgtggtagcataggtttgtttgg |
127 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20000724 |
accatcacaaattggttcagagcagaaaatgttttacacctgcctagttgtataccaatgtggtagcataggtttgtttgg |
20000804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 20029891 - 20029969
Alignment:
| Q |
49 |
catcacaaactgattcagagcagaaaatgttttgcacctgcatagttgtatcacaatgtggtagcataggtttgtttgg |
127 |
Q |
| |
|
|||| |||| || |||||| ||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
20029891 |
catctcaaattggttcagatcagaaaatgttttacacctgcatagttgtatcccaatgtggtatcataggtttgtttgg |
20029969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 50899888 - 50899833
Alignment:
| Q |
297 |
cctgcattgtttctcttacgacaatatttctgtcgaaatcaattactgtaaatcac |
352 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50899888 |
cctgcattgtttctcttacgacaatatttatgtcgaaatcaattactgtaaatcac |
50899833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 12572308 - 12572223
Alignment:
| Q |
42 |
aagataccatcacaaactgattcagagcagaaaatgttttgcacctgcatagttgtatcacaatgtggtagcataggtttgtttgg |
127 |
Q |
| |
|
|||||||||||||||| || ||||||| |||||||||||| ||||||||||| |||| |||||||||| ||||||||||||||| |
|
|
| T |
12572308 |
aagataccatcacaaattggttcagagtagaaaatgttttacacctgcatagctgtagtccaatgtggtaacataggtttgtttgg |
12572223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 38192329 - 38192386
Alignment:
| Q |
70 |
agaaaatgttttgcacctgcatagttgtatcacaatgtggtagcataggtttgtttgg |
127 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
38192329 |
agaaaatgttttacacctgcatagttgtagtgcaatgtggtagcataggattatttgg |
38192386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 48301223 - 48301298
Alignment:
| Q |
48 |
ccatcacaaactgattcagagcagaaaatgttttgcacctgcatagttgtatcacaatgtggtagcataggtttgt |
123 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||| |||||||||| |||| | ||||||||||||||||| |||| |
|
|
| T |
48301223 |
ccatcacaaattgatacaaagcagaaaatgttttaaacctgcataggtgtagcccaatgtggtagcataggattgt |
48301298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 35038756 - 35038835
Alignment:
| Q |
47 |
accatcacaaactgattcagagcagaaaatgttttgcacctgcatagttgtatcacaatgtggtagcataggtttgtttgg |
127 |
Q |
| |
|
||||||||||| || || |||| |||||||||||| |||||||| |||||||| ||| ||| |||||||||||||||||| |
|
|
| T |
35038756 |
accatcacaaattggtttagagtagaaaatgttttacacctgcaaagttgtat-gcaacgtgttagcataggtttgtttgg |
35038835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 35039566 - 35039528
Alignment:
| Q |
89 |
catagttgtatcacaatgtggtagcataggtttgtttgg |
127 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35039566 |
catagttgtatcccaatgtggtagcataggtttgtttgg |
35039528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University