View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14812_high_19 (Length: 221)
Name: NF14812_high_19
Description: NF14812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14812_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 207
Target Start/End: Original strand, 32603180 - 32603383
Alignment:
| Q |
4 |
tacagacaccagcaccacatttacacttaggatacttaaccaaagaaggctccaaatccctttcatcatcgcaccacttcacaaaggtaccacaaggtgc |
103 |
Q |
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| T |
32603180 |
tacagacaccagcaccacatttacacttaggatacttaaccaaagaaggctccaaatccctttcatcatcgcaccacttcacaaaggtaccacaaggtgc |
32603279 |
T |
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| Q |
104 |
accctagaaacaaaaacacatagtaaacaaaacttggtagtaatcactaaaaatacaatctttaaggtgttagtaacatacccttttgataggacaagca |
203 |
Q |
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| T |
32603280 |
accctagaaacaaaaacacacagtaaacaaaacttggtagtaatcactaaaaatacaatctttaaggtgttagtaacatacccttttgataggacaagca |
32603379 |
T |
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| Q |
204 |
aagt |
207 |
Q |
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|||| |
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| T |
32603380 |
aagt |
32603383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 31905965 - 31906152
Alignment:
| Q |
19 |
cacatttacacttaggatacttaaccaaagaaggctccaaatccctttcatcatcgcaccacttcacaaaggtaccacaaggtgcaccctagaaacaaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||| |||||||| |
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| T |
31905965 |
cacatttacacttaggatacttaaccaaagaaggctccaaatccctctcatcatcacaccacttcacaaaagtactacaaggtgcaccctgaaaacaaaa |
31906064 |
T |
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| Q |
119 |
acacatagtaaacaaaacttggtagtaatcactaaaaatacaatctttaaggtgttagtaacatacccttttgataggacaagcaaagt |
207 |
Q |
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| T |
31906065 |
acacacagtaaacaaagatt-gaaataatcactaaaaatacaaacttgaaggtgttagtaacatacccttttgataggacatgcaaagt |
31906152 |
T |
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