View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14812_low_1 (Length: 887)
Name: NF14812_low_1
Description: NF14812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14812_low_1 |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0032 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 336 - 615
Target Start/End: Complemental strand, 41124131 - 41123851
Alignment:
| Q |
336 |
gaaagaagtaaatgaaagtggataatagaaaagatgattgttggtttggaaggagggtgggaaagatgagattatggcatgttt-agaaatgaatggttg |
434 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41124131 |
gaaagaagtaaatgaaactggataatagaaaagatgattgttggtttggaaggagggtgggaaagatgagattatggcatgttttagaaatgaatggttg |
41124032 |
T |
|
| Q |
435 |
aagttgaacaaagagaaaggaaataatgaatgagagaaaccgagaaaaagtgaaatctatttaaaaatagaatttgaaatttatatgatagaagaaaggg |
534 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41124031 |
aagttgaagaaagagaaaggaaataatgaatgagagaaaccgagaaaaagtgacatctatttaaaaataggatttgaaatttatatgatagaagaaaggg |
41123932 |
T |
|
| Q |
535 |
aggaatatactttaaataatacaaattacattaaccttcacttttggtaatgtgtcaaaaattaaagaaagggtaagaatg |
615 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41123931 |
aggaatatactttaaataatacaaattacattaaccttcacttttagtaatgtgtcaaaaattaaagaaagggtaagaatg |
41123851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 41124451 - 41124248
Alignment:
| Q |
13 |
cttttaacatttatcaataaaaaatgtttcttcccgtgtttcaaaacttatatttataaactatttcatttggtataattacattccaaccatgttttag |
112 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || |||||||||||| |||||||||||||| |||||| |
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| T |
41124451 |
cttttaacatttatcaataaaaaatgttt-ttcccgtgtttcaaaacttatatttacaaattacttcatttggtat---tacattccaaccatcttttag |
41124356 |
T |
|
| Q |
113 |
agacttcatctgtaagatgtttctttctctcttctttctgtcatattatatttgtttatattgtttcaaaaagaacataatcgatggtaaccgcaagaga |
212 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
41124355 |
agacttcatctgtaagatgtttctttctccattctttctgtcatattatatttgtttatattatttcaaaaagaacataaccgatggtaaccgcaagaga |
41124256 |
T |
|
| Q |
213 |
caatataa |
220 |
Q |
| |
|
|||||||| |
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|
| T |
41124255 |
caatataa |
41124248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 612 - 742
Target Start/End: Complemental strand, 41123460 - 41123330
Alignment:
| Q |
612 |
aatgtggatttggccgttatcctctcattgacgatcgtttctctcactctcacaacactctctcccttgtcatccaccaaatctttacttcaacatcatc |
711 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41123460 |
aatgtggatttggccgttagcctctcattgacgatcgtttctctcactctcacaacactctctcccttgtcatccaccaaatctttacttcaacatcatc |
41123361 |
T |
|
| Q |
712 |
tcatattatcaccaccgtgctagtgagcggg |
742 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
41123360 |
tcatattatcaccaccgtgctagtgagcggg |
41123330 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 776 - 874
Target Start/End: Complemental strand, 3517579 - 3517481
Alignment:
| Q |
776 |
tttctgttgactttgacaatttcaatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttggtatcgaggtgatg |
874 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3517579 |
tttctgctgactttgacaatttcaatcagtttattgacaataattctctcattgatttacctttgtgtggtcgtaactttacttggtatcgaggtgatg |
3517481 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 776 - 874
Target Start/End: Original strand, 17151138 - 17151236
Alignment:
| Q |
776 |
tttctgttgactttgacaatttcaatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttggtatcgaggtgatg |
874 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||| ||||||| |
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|
| T |
17151138 |
tttctgttgactatgataatttcaatcagtttattgacagtaattctctcattgatttacctttatgtggccgcaattttacttggtatcggggtgatg |
17151236 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 7e-36; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 777 - 866
Target Start/End: Complemental strand, 12124479 - 12124390
Alignment:
| Q |
777 |
ttctgttgactttgacaatttcaatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttggtatcg |
866 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12124479 |
ttctgttgactatgataatttcaatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttgatatcg |
12124390 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 776 - 874
Target Start/End: Complemental strand, 591006 - 590908
Alignment:
| Q |
776 |
tttctgttgactttgacaatttcaatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttggtatcgaggtgatg |
874 |
Q |
| |
|
||||||||||| || |||||||||||||| || |||| ||||| |||||||||||||||||| |||||||| || ||||| |||||||| ||||||| |
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|
| T |
591006 |
tttctgttgaccatgctaatttcaatcagttcatagacaataattttctcattgatttacctttatgtggtcgcaattttacctggtatcggggtgatg |
590908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 799 - 866
Target Start/End: Original strand, 20695366 - 20695433
Alignment:
| Q |
799 |
aatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttggtatcg |
866 |
Q |
| |
|
|||||||| |||||| |||||| ||| |||||||||||| |||| |||||||| ||||| |||||||| |
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|
| T |
20695366 |
aatcagttcattgacggtaattttcttattgatttacctctgtgaggtcgtaattttacctggtatcg |
20695433 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 799 - 866
Target Start/End: Original strand, 20700844 - 20700911
Alignment:
| Q |
799 |
aatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttggtatcg |
866 |
Q |
| |
|
|||||||| |||||| |||||| ||| |||||||||||| |||| |||||||| ||||| |||||||| |
|
|
| T |
20700844 |
aatcagttcattgacggtaattttcttattgatttacctctgtgaggtcgtaattttacctggtatcg |
20700911 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 799 - 874
Target Start/End: Complemental strand, 47556161 - 47556086
Alignment:
| Q |
799 |
aatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttggtatcgaggtgatg |
874 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||||||| ||| ||||||||| ||||||||||| ||||| |||| |
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|
| T |
47556161 |
aatcagtttattgatggtaattgtcttattgatttaccgttggttggtcgtaattttacttggtaccgaggagatg |
47556086 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 7e-36; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 777 - 866
Target Start/End: Original strand, 18292725 - 18292814
Alignment:
| Q |
777 |
ttctgttgactttgacaatttcaatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttggtatcg |
866 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
18292725 |
ttctgttgactatgataatttcaatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttgttatcg |
18292814 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 795 - 866
Target Start/End: Complemental strand, 2897080 - 2897009
Alignment:
| Q |
795 |
tttcaatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttggtatcg |
866 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2897080 |
tttcaatcagtttattgacagcaattctctcattgatttacctttgtgtggtcgtaattttacttggtatcg |
2897009 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 795 - 866
Target Start/End: Original strand, 5388871 - 5388942
Alignment:
| Q |
795 |
tttcaatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttggtatcg |
866 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||||||| ||| || |||||| ||||||||||||||||| |
|
|
| T |
5388871 |
tttcaatcagtttattgacggtaattgtcttattgattcaccgttagttggtcgcaactttacttggtatcg |
5388942 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 793 - 874
Target Start/End: Complemental strand, 21967471 - 21967390
Alignment:
| Q |
793 |
aatttcaatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttggtatcgaggtgatg |
874 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
21967471 |
aatttcaatcagtttattgacagtaattctctcattgatttacctttatgtggccgtaactttacttggtatcggggtgatg |
21967390 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 796 - 863
Target Start/End: Original strand, 15646503 - 15646570
Alignment:
| Q |
796 |
ttcaatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttggta |
863 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
15646503 |
ttcaatcagtttattgatagtaattctctcattgatttacctttatgtggccgtaattttacttggta |
15646570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 795 - 874
Target Start/End: Original strand, 17824128 - 17824207
Alignment:
| Q |
795 |
tttcaatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttggtatcgaggtgatg |
874 |
Q |
| |
|
||||||||| || |||||| |||||| |||||||||||||||||| |||||||| || ||||| |||||||| ||||||| |
|
|
| T |
17824128 |
tttcaatcaattcattgacggtaattttctcattgatttacctttatgtggtcgcaattttacctggtatcggggtgatg |
17824207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 799 - 874
Target Start/End: Original strand, 222067 - 222142
Alignment:
| Q |
799 |
aatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttggtatcgaggtgatg |
874 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
222067 |
aatcagttcattgatggtaattttctcattgatttaccgttgtgtggccgtaactttacgtggtatcgaggagatg |
222142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 799 - 874
Target Start/End: Original strand, 10799031 - 10799106
Alignment:
| Q |
799 |
aatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttggtatcgaggtgatg |
874 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||||||| ||| ||||||||| ||||||||||| ||||| |||| |
|
|
| T |
10799031 |
aatcagtttattgatggtaattgtcttattgatttaccgttggttggtcgtaattttacttggtaccgaggagatg |
10799106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 799 - 866
Target Start/End: Original strand, 50331 - 50398
Alignment:
| Q |
799 |
aatcagtttattgacagtaattctctcattgatttacctttgtgtggtcgtaactttacttggtatcg |
866 |
Q |
| |
|
|||||||| |||||| |||||| ||||||||||| |||||| ||||||| || ||||| |||||||| |
|
|
| T |
50331 |
aatcagttcattgacggtaattttctcattgattcacctttatgtggtcacaattttacctggtatcg |
50398 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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