View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14812_low_10 (Length: 357)
Name: NF14812_low_10
Description: NF14812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14812_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 48089421 - 48089580
Alignment:
| Q |
8 |
ctaaagtgacaatagaagcagctgcacaccaaaactaaggggatgagattgaaagttgagagagaggataagaagagggcaagaggtgcgcgggactcag |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
48089421 |
ctaaagtgacaatagaagcagctgcacaccaaaactaaggggatgagattgaaagttgagagagaggataagaagagggcaagaggtgcacatgactcag |
48089520 |
T |
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| Q |
108 |
ggaaaagggaaaaagacagagttatttactgagttactgattttgtgttttattaattat |
167 |
Q |
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| T |
48089521 |
gggaaagggaaaaggacatagttatttactgagttactgattttgtgttttattaattat |
48089580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 202 - 341
Target Start/End: Original strand, 48089611 - 48089750
Alignment:
| Q |
202 |
agctatagctccacatggcaccaacgtgcatccgcccctgaggaggacttacacaaaaaatgatcgagggactttgacaacttcactattcactaagacc |
301 |
Q |
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| T |
48089611 |
agctatagctccacatggcatcaatgtgcatccgcccttgaggaggacttacacaaaaaatgatcgagggactttgacaacttcactattcactaagacc |
48089710 |
T |
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| Q |
302 |
atccacaagcgtgatttcttcactaatttagcacacattc |
341 |
Q |
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| T |
48089711 |
atccagaagtgtgattgcttcactaatttagcacacattc |
48089750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 168
Target Start/End: Complemental strand, 33003123 - 33002993
Alignment:
| Q |
38 |
aaaactaaggggatgagattgaaagttgagagagaggataagaagagggcaagaggtgcgcgggactcagggaaaagggaaaaagacagagttatttact |
137 |
Q |
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| T |
33003123 |
aaaactaaggagatgagattgaaagttgagagagaggatgagaggagggcaagaggcacgcatgactcaagggaaagggaaaaggagagagttatttact |
33003024 |
T |
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| Q |
138 |
gagttactgattttgtgttttattaattata |
168 |
Q |
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|||| ||| ||||||||||||| ||||||| |
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| T |
33003023 |
gagtcacttcttttgtgttttatcaattata |
33002993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 1692119 - 1692189
Alignment:
| Q |
98 |
cgggactcagggaaaagggaaaaagacagagttatttactgagttactgattttgtgttttattaattata |
168 |
Q |
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| T |
1692119 |
cgggattcaggggaaagggaaaaagagagagttatttaccgagtcacttcttttgtgttttatcaattata |
1692189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 1692212 - 1692258
Alignment:
| Q |
195 |
catgtggagctatagctccacatggcaccaacgtgcatccgcccctg |
241 |
Q |
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| T |
1692212 |
catgcggagctttagctccacatagcaccaatgtgcatccgcccctg |
1692258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 18076005 - 18076151
Alignment:
| Q |
23 |
aagcagctgcacaccaaaactaaggggatgagattgaaagttgagagagaggataagaagagggcaagaggtgcgcgggactcagggaaaaggg-aaaaa |
121 |
Q |
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||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| |||| |||||| |||||||||| ||||| |
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| T |
18076005 |
aagcagcagcacatcaaaactaaggggacgagattgaaagttgagagagaggatgacaagagggcaagaggcgcgcaggactccgggaaaagggaaaaaa |
18076104 |
T |
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| Q |
122 |
gacagagttatttactgagttactgattttgtgttttattaattata |
168 |
Q |
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|| |||||||||||| |||||||| ||||||||||||| ||||||| |
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| T |
18076105 |
gagagagttatttaccgagttacttcttttgtgttttatcaattata |
18076151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 40372931 - 40373050
Alignment:
| Q |
23 |
aagcagctgcacaccaaaactaaggggatgagattgaaagttgagagagaggataagaagagggcaagaggtgcgcgggactcagggaaaagggaaaaag |
122 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||| |||| |||||||| |||||||||| |
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| T |
40372931 |
aagcagcaacacaccaaaactaaggggatgagattgaaagttgagagtgaggatgagaagaggacaagagacgcgcaagactcaggagaaagggaaaaga |
40373030 |
T |
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| Q |
123 |
acagagttatttactgagtt |
142 |
Q |
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| T |
40373031 |
agagagttatttactgagtt |
40373050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 4377846 - 4377893
Alignment:
| Q |
195 |
catgtggagctatagctccacatggcaccaacgtgcatccgcccctga |
242 |
Q |
| |
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||||||||||||||||||||||| || ||||| || |||||||||||| |
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| T |
4377846 |
catgtggagctatagctccacattgccccaacatggatccgcccctga |
4377893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 10780723 - 10780678
Alignment:
| Q |
197 |
tgtggagctatagctccacatggcaccaacgtgcatccgcccctga |
242 |
Q |
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||||||||||||||||||||| || ||||| || |||||||||||| |
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| T |
10780723 |
tgtggagctatagctccacattgccccaacatggatccgcccctga |
10780678 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 7728683 - 7728627
Alignment:
| Q |
112 |
aagggaaaaagacagagttatttactgagttactgattttgtgttttattaattata |
168 |
Q |
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|||||||||||| ||||||||||| ||||| ||| |||| |||||||| ||||||| |
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| T |
7728683 |
aagggaaaaagagagagttatttaatgagtcacttcttttctgttttatcaattata |
7728627 |
T |
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