View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14812_low_11 (Length: 351)
Name: NF14812_low_11
Description: NF14812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14812_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 53868135 - 53868469
Alignment:
| Q |
1 |
aatgatacatgatcgacatatggcccgtgtcttcatttgatatattcatttttcatatcttgcatttctttcttcatgctcgtgttttatcattttgttt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53868135 |
aatgatacatgatcgacatatggcccgtttcttcatttgatatatttatttttcatatcttgcatttctttcttcatgctcgtgttttatcattttgttt |
53868234 |
T |
|
| Q |
101 |
gcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcctcttgtgacgttgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53868235 |
gcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcctcttgtgacgttgca |
53868334 |
T |
|
| Q |
201 |
gttttcgccaatgacaggtgaaaaatgatatttaagtgttcattacgccaatataccatagaaattatggattgcctttgttgcataggtattttgtaga |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
53868335 |
gttttcgttcatgacaggtgaaaaatgatatttaagtgttcattacgccaatataacatagaaattatggattgcctttgttacataggtattttgtaga |
53868434 |
T |
|
| Q |
301 |
gtacttgggtcatatatttggtcatgttataaatg |
335 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
53868435 |
gtacttgggtcatatatttggtcatgttataaatg |
53868469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 54159176 - 54158848
Alignment:
| Q |
1 |
aatgatacatgatcgacatatggcccgtgtcttcatttgatatattcatttttca-tatcttgcatttctttcttcatgctcgtgttttatcattttgtt |
99 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||| | ||||||||||||||||| |
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| T |
54159176 |
aatgatacatgattcacatatgacccgtgtcttcatttgatatattcattttttaatatcttgcatttctttcttcatatttatgttttatcattttgtt |
54159077 |
T |
|
| Q |
100 |
tgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcctcttgtgacgttgc |
199 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||| |||| |
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| T |
54159076 |
tgcagggaaagaagaaatatcttgtgctgagagagattcctgaagatggagttaaagggctgctggcgaataaggagtctttggcctcttgtgacattgc |
54158977 |
T |
|
| Q |
200 |
agttttcgccaatgacaggtgaaaaatgatatttaagtgttcattacgccaatataccatagaaattatggattgcctttgttgcataggtattttgtag |
299 |
Q |
| |
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| || | | |||||||||||| ||||||||||||||||||||| ||| ||||||||| |||| || ||| | |||||||| |||||| |||||||| |
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| T |
54158976 |
aattattgttcatgacaggtgaatgatgatatttaagtgttcattatgcctatataccattgaaaatagggactacctttgttacatagggattttgtaa |
54158877 |
T |
|
| Q |
300 |
agtacttgggtcatatatttggtcatgtt |
328 |
Q |
| |
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| ||| |||||| ||||||||||| |||| |
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| T |
54158876 |
aatacgtgggtcgtatatttggtcgtgtt |
54158848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 56 - 199
Target Start/End: Complemental strand, 51366031 - 51365889
Alignment:
| Q |
56 |
tatcttgcatttctttcttcatgctcgtgttttatcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagt-tag |
154 |
Q |
| |
|
||||||||||||||||||||| | || |||||||||||| ||||||||||||||||||||||||||| ||| ||| |||| |||||||||||| || |
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| T |
51366031 |
tatcttgcatttctttcttcaagttcatgttttatcattag--ttgcagggaaacaagaaatatcttgtgttgaaagagattcatgaagatggagtcaag |
51365934 |
T |
|
| Q |
155 |
agagctgctggcgaataataagtctttggcctcttgtgacgttgc |
199 |
Q |
| |
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||| |||||||| ||||| |||||||||||||||||||| |||| |
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|
| T |
51365933 |
agaactgctggctaataaggagtctttggcctcttgtgacattgc |
51365889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 221
Target Start/End: Complemental strand, 15048373 - 15048241
Alignment:
| Q |
89 |
atcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcctct |
188 |
Q |
| |
|
||||||||||||| ||| |||||| |||||||||||||||||||| ||| |||||| ||||| | | ||||||| || ||||| |||||||||||||| |
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| T |
15048373 |
atcattttgtttgtaggaaaacaaaaaatatcttgtgctgagagagatttctgaaggaggagtcacaaagctgctagccaataagaagtctttggcctca |
15048274 |
T |
|
| Q |
189 |
tgtgacgttgcagttttcgccaatgacaggtga |
221 |
Q |
| |
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|||||| ||||| |||| | ||||||||||| |
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| T |
15048273 |
tgtgacattgcaatttttgtttatgacaggtga |
15048241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 17881140 - 17881024
Alignment:
| Q |
89 |
atcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcctct |
188 |
Q |
| |
|
||||||||||||| ||| |||||| |||||||||||||||||||| ||| |||||| |||||| | | ||||||| || ||||| ||||||||||||| |
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| T |
17881140 |
atcattttgtttgtaggaaaacaaaaaatatcttgtgctgagagagatttctgaaggtggagtcacaaagctgctagccaataaggagtctttggcctca |
17881041 |
T |
|
| Q |
189 |
tgtgacgttgcagtttt |
205 |
Q |
| |
|
|||||| |||| ||||| |
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| T |
17881040 |
tgtgacattgcggtttt |
17881024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 221
Target Start/End: Complemental strand, 15015639 - 15015504
Alignment:
| Q |
86 |
tttatcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcc |
185 |
Q |
| |
|
|||| ||||||||||| ||| |||||| |||||| ||||||||||||| ||| |||||| |||||||| | ||||||| || || || ||||| ||| | |
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|
| T |
15015639 |
tttaccattttgtttgtaggaaaacaaaaaatatattgtgctgagagagatttctgaaggtggagttacaaagctgctagcaaacaaggagtctctgggc |
15015540 |
T |
|
| Q |
186 |
tcttgtgacgttgcagttttcgccaatgacaggtga |
221 |
Q |
| |
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|| |||||| |||||||||| | ||||||||||| |
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| T |
15015539 |
tcatgtgacattgcagtttttgttcatgacaggtga |
15015504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 14773869 - 14773768
Alignment:
| Q |
93 |
ttttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcctcttgtg |
192 |
Q |
| |
|
|||| |||| ||| |||||| |||||||||||| ||||||| ||| ||||| |||||| | |||||||||||| || || ||||||||||||| |||| |
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|
| T |
14773869 |
ttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaacaaggagtctttggcctcatgtg |
14773770 |
T |
|
| Q |
193 |
ac |
194 |
Q |
| |
|
|| |
|
|
| T |
14773769 |
ac |
14773768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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