View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14812_low_12 (Length: 300)

Name: NF14812_low_12
Description: NF14812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14812_low_12
NF14812_low_12
[»] chr3 (4 HSPs)
chr3 (1-168)||(44497485-44497652)
chr3 (1-175)||(29829898-29830063)
chr3 (45-169)||(2063950-2064074)
chr3 (136-168)||(14539905-14539937)
[»] chr8 (3 HSPs)
chr8 (1-156)||(28994150-28994305)
chr8 (115-168)||(16296575-16296628)
chr8 (115-168)||(16304277-16304330)
[»] chr6 (2 HSPs)
chr6 (1-168)||(1606155-1606313)
chr6 (133-168)||(12190872-12190907)
[»] chr1 (5 HSPs)
chr1 (3-164)||(22049236-22049397)
chr1 (115-168)||(22894339-22894392)
chr1 (46-82)||(48580683-48580719)
chr1 (136-166)||(2351667-2351697)
chr1 (141-173)||(50442496-50442528)
[»] chr7 (4 HSPs)
chr7 (169-243)||(7144198-7144272)
chr7 (110-168)||(41120826-41120884)
chr7 (136-168)||(5356701-5356733)
chr7 (141-169)||(8291334-8291362)
[»] chr2 (5 HSPs)
chr2 (45-168)||(19866977-19867100)
chr2 (45-168)||(19871878-19872001)
chr2 (45-168)||(19876779-19876902)
chr2 (45-168)||(36585660-36585783)
chr2 (45-82)||(19862408-19862445)
[»] chr5 (5 HSPs)
chr5 (134-169)||(14083994-14084029)
chr5 (137-169)||(5323092-5323124)
chr5 (112-156)||(39289023-39289067)
chr5 (112-156)||(39384269-39384313)
chr5 (141-169)||(39384308-39384336)
[»] scaffold0041 (1 HSPs)
scaffold0041 (110-168)||(102265-102323)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 44497485 - 44497652
Alignment:
Q  1 tctgaatcttcaaaaccgcacatacccgcccgataaacccgtggcccgaaagacccgaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttg 100  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44497485 tctgaatcttcaaaaccgctcatacccacccgataaacccgtgacccgaaagacccgaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttg 44497584  T
Q  101 ctacacacaaaccgcgggttgggatgggttgaaggtttgggcccgaacccgcccgatgtccaccccta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44497585 ctacacacaaaccgcgggttgggatgggttgaaggtttgggcccgaacccgcccgatgtccaccccta 44497652  T

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Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 29829898 - 29830063
Alignment:
Q  1 tctgaatcttcaaaaccgcacatacccgcccgataaacccgtggcccgaaagacccgaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttg 100  Q
    |||||||||||||||| |||||||||| |||||||||||||||         |||||||||||||||||||||||||||||||||||| |||||||||||    
T  29829898 tctgaatcttcaaaactgcacatacccacccgataaacccgtg---------acccgaacccgtacaaaccgaagaagaaaaatgggtggaaatgggttg 29829988  T
Q  101 ctacacacaaaccgcgggttgggatgggttgaaggtttgggcccgaacccgcccgatgtccacccctaaatatat 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29829989 ctacacacaaaccgcgggttgggatgggttgaaggtttgggcccgaacccgcccgatgtccacccctatatatat 29830063  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 2064074 - 2063950
Alignment:
Q  45 cccgaaagacccgaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttgctacacacaaaccgcgggttgggatgggttgaaggtttgggccc 144  Q
    |||||||||||||||||||| |||||||||||||||||    ||  ||||||||   |||||||||||||||||||| | ||||| ||   ||  | |||    
T  2064074 cccgaaagacccgaacccgtgcaaaccgaagaagaaaagctagtttaaatgggtctgtacacacaaaccgcgggttgagctgggtcgagctttcagaccc 2063975  T
Q  145 gaacccgcccgatgtccacccctaa 169  Q
    ||||||||||| |||||||||||||    
T  2063974 gaacccgcccgttgtccacccctaa 2063950  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 14539905 - 14539937
Alignment:
Q  136 tttgggcccgaacccgcccgatgtccaccccta 168  Q
    |||||| ||||||||||||||||||||||||||    
T  14539905 tttgggtccgaacccgcccgatgtccaccccta 14539937  T

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Target: chr8 (Bit Score: 136; Significance: 6e-71; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 28994150 - 28994305
Alignment:
Q  1 tctgaatcttcaaaaccgcacatacccgcccgataaacccgtggcccgaaagacccgaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttg 100  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28994150 tctgaatcttcaaaaccgcacatacccgctcgataaacctgtggcccgaaagacccaaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttg 28994249  T
Q  101 ctacacacaaaccgcgggttgggatgggttgaaggtttgggcccgaacccgcccga 156  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  28994250 ctacacacaaaccgcgggttggtatgggttgaaggtttgggcccgaaccctcccga 28994305  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 16296628 - 16296575
Alignment:
Q  115 cgggttgggatgggttgaaggtttgggcccgaacccgcccgatgtccaccccta 168  Q
    |||||||||||||| ||    |||||||||||||||||||||||||||||||||    
T  16296628 cgggttgggatgggctgccactttgggcccgaacccgcccgatgtccaccccta 16296575  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 16304330 - 16304277
Alignment:
Q  115 cgggttgggatgggttgaaggtttgggcccgaacccgcccgatgtccaccccta 168  Q
    |||||||||||||| ||    |||||||||||||||||||||||||||||||||    
T  16304330 cgggttgggatgggctgccactttgggcccgaacccgcccgatgtccaccccta 16304277  T

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Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 1606155 - 1606313
Alignment:
Q  1 tctgaatcttcaaaaccgcacatacccgcccgataaacccgtggcccgaaagacccgaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttg 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||         |||| |||||||||||||||||||||||||||||||||||||||||||    
T  1606155 tctgaatcttcaaaaccgcacatacccacccgataaacccgtg---------acccaaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttg 1606245  T
Q  101 ctacacacaaaccgcgggttgggatgggttgaaggtttgggcccgaacccgcccgatgtccaccccta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1606246 ctacacacaaaccgcgggttgggatgggttgaaggtttgggcccgaacccgcccgatgtccaccccta 1606313  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 12190872 - 12190907
Alignment:
Q  133 aggtttgggcccgaacccgcccgatgtccaccccta 168  Q
    |||||||| |||||||||||||||||||||||||||    
T  12190872 aggtttggacccgaacccgcccgatgtccaccccta 12190907  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 22049236 - 22049397
Alignment:
Q  3 tgaatcttcaaaaccgcacatacccgcccgataaacccgtggcccgaaagacccgaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttgct 102  Q
    |||||||||||||||| ||||| || |||||||||||| ||   | ||||||||||||  ||||||||||||||||| ||||||| ||||||||||  ||    
T  22049236 tgaatcttcaaaaccggacatatccacccgataaacccatgatacaaaagacccgaacttgtacaaaccgaagaagagaaatgggcagaaatgggtctct 22049335  T
Q  103 acacacaaaccgcgggttgggatgggttgaaggtttgggcccgaacccgcccgatgtccacc 164  Q
    | |||||||| ||| |||||||| |||||| |||| ||||| ||||||||||||||||||||    
T  22049336 atacacaaactgcgagttgggataggttgagggttcgggcctgaacccgcccgatgtccacc 22049397  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 22894392 - 22894339
Alignment:
Q  115 cgggttgggatgggttgaaggtttgggcccgaacccgcccgatgtccaccccta 168  Q
    |||||||||||||| ||    |||||||||||||||||||||||||||||||||    
T  22894392 cgggttgggatgggctgccactttgggcccgaacccgcccgatgtccaccccta 22894339  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 48580719 - 48580683
Alignment:
Q  46 ccgaaagacccgaacccgtacaaaccgaagaagaaaa 82  Q
    ||||||||||||||||||| |||||||||||||||||    
T  48580719 ccgaaagacccgaacccgtgcaaaccgaagaagaaaa 48580683  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 166
Target Start/End: Complemental strand, 2351697 - 2351667
Alignment:
Q  136 tttgggcccgaacccgcccgatgtccacccc 166  Q
    |||||||||||||||||||||||||||||||    
T  2351697 tttgggcccgaacccgcccgatgtccacccc 2351667  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 50442496 - 50442528
Alignment:
Q  141 gcccgaacccgcccgatgtccacccctaaatat 173  Q
    |||||||||||||||||||||||||||| ||||    
T  50442496 gcccgaacccgcccgatgtccacccctacatat 50442528  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 7144272 - 7144198
Alignment:
Q  169 aatatatacatagcttgcataaaagataatgagaataagcattgaatacacgtgaatattgttgattaaagttac 243  Q
    |||||||||||||||||||||||||||  ||||||||| |||| |||||| || |||||||||||||||||||||    
T  7144272 aatatatacatagcttgcataaaagattttgagaataaacattaaatacaagttaatattgttgattaaagttac 7144198  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 41120826 - 41120884
Alignment:
Q  110 aaccgcgggttgggatgggttgaaggtttgggcccgaacccgcccgatgtccaccccta 168  Q
    |||||||||||||| ||||| |  | ||||| |||||||||||||||||||||||||||    
T  41120826 aaccgcgggttgggctgggtgggtgctttggacccgaacccgcccgatgtccaccccta 41120884  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 5356733 - 5356701
Alignment:
Q  136 tttgggcccgaacccgcccgatgtccaccccta 168  Q
    |||||||||||||||||| ||||||||||||||    
T  5356733 tttgggcccgaacccgcctgatgtccaccccta 5356701  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 8291362 - 8291334
Alignment:
Q  141 gcccgaacccgcccgatgtccacccctaa 169  Q
    |||||||||||||||||||||||||||||    
T  8291362 gcccgaacccgcccgatgtccacccctaa 8291334  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 19866977 - 19867100
Alignment:
Q  45 cccgaaagacccgaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttgctacacacaaaccgcgggttgggatgggttgaaggtttgggccc 144  Q
    |||||||||||||||||||| |||||||||||||||||    |   ||||||||   |||||||||||||||||||| | ||||| ||   ||  | |||    
T  19866977 cccgaaagacccgaacccgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacacacaaaccgcgggttgagctgggtcgagctttcagaccc 19867076  T
Q  145 gaacccgcccgatgtccaccccta 168  Q
    ||||||||||| ||||||||||||    
T  19867077 gaacccgcccgttgtccaccccta 19867100  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 19871878 - 19872001
Alignment:
Q  45 cccgaaagacccgaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttgctacacacaaaccgcgggttgggatgggttgaaggtttgggccc 144  Q
    |||||||||||||||||||| |||||||||||||||||    |   ||||||||   |||||||||||||||||||| | ||||| ||   ||  | |||    
T  19871878 cccgaaagacccgaacccgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacacacaaaccgcgggttgagctgggtcgagctttcagaccc 19871977  T
Q  145 gaacccgcccgatgtccaccccta 168  Q
    ||||||||||| ||||||||||||    
T  19871978 gaacccgcccgttgtccaccccta 19872001  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 19876779 - 19876902
Alignment:
Q  45 cccgaaagacccgaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttgctacacacaaaccgcgggttgggatgggttgaaggtttgggccc 144  Q
    |||||||||||||||||||| |||||||||||||||||    |   ||||||||   |||||||||||||||||||| | ||||| ||   ||  | |||    
T  19876779 cccgaaagacccgaacccgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacacacaaaccgcgggttgagctgggtcgagctttcagaccc 19876878  T
Q  145 gaacccgcccgatgtccaccccta 168  Q
    ||||||||||| ||||||||||||    
T  19876879 gaacccgcccgttgtccaccccta 19876902  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 36585660 - 36585783
Alignment:
Q  45 cccgaaagacccgaacccgtacaaaccgaagaagaaaaatgggtagaaatgggttgctacacacaaaccgcgggttgggatgggttgaaggtttgggccc 144  Q
    |||||||||||||||||||| |||||||||||||||||    |   ||||||||   |||||||||||||||||||| | ||||| ||   ||  | |||    
T  36585660 cccgaaagacccgaacccgtgcaaaccgaagaagaaaagctagcttaaatgggtctgtacacacaaaccgcgggttgagctgggtcgagctttcagaccc 36585759  T
Q  145 gaacccgcccgatgtccaccccta 168  Q
    ||||||||||| ||||||||||||    
T  36585760 gaacccgcccgttgtccaccccta 36585783  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 19862408 - 19862445
Alignment:
Q  45 cccgaaagacccgaacccgtacaaaccgaagaagaaaa 82  Q
    |||||||||||||||||||| |||||||||||||||||    
T  19862408 cccgaaagacccgaacccgtgcaaaccgaagaagaaaa 19862445  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 14084029 - 14083994
Alignment:
Q  134 ggtttgggcccgaacccgcccgatgtccacccctaa 169  Q
    ||||||||||||||||||||||||||||||||||||    
T  14084029 ggtttgggcccgaacccgcccgatgtccacccctaa 14083994  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 5323124 - 5323092
Alignment:
Q  137 ttgggcccgaacccgcccgatgtccacccctaa 169  Q
    |||||||||||||||||||||| ||||||||||    
T  5323124 ttgggcccgaacccgcccgatgcccacccctaa 5323092  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 39289067 - 39289023
Alignment:
Q  112 ccgcgggttgggatgggttgaaggtttgggcccgaacccgcccga 156  Q
    ||||||||| || ||||| || |||||||||||||||||||||||    
T  39289067 ccgcgggttcggctgggtggagggtttgggcccgaacccgcccga 39289023  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 39384269 - 39384313
Alignment:
Q  112 ccgcgggttgggatgggttgaaggtttgggcccgaacccgcccga 156  Q
    ||||||||| || ||||| || |||||||||||||||||||||||    
T  39384269 ccgcgggttcggctgggtggagggtttgggcccgaacccgcccga 39384313  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 169
Target Start/End: Original strand, 39384308 - 39384336
Alignment:
Q  141 gcccgaacccgcccgatgtccacccctaa 169  Q
    |||||||||||||||||||||||||||||    
T  39384308 gcccgaacccgcccgatgtccacccctaa 39384336  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 102323 - 102265
Alignment:
Q  110 aaccgcgggttgggatgggttgaaggtttgggcccgaacccgcccgatgtccaccccta 168  Q
    |||||||||||||| ||||| |  | ||||| |||||||||||||||||||||||||||    
T  102323 aaccgcgggttgggctgggtgggtgctttggacccgaacccgcccgatgtccaccccta 102265  T

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