View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14812_low_14 (Length: 297)
Name: NF14812_low_14
Description: NF14812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14812_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 22 - 263
Target Start/End: Complemental strand, 6206569 - 6206319
Alignment:
| Q |
22 |
atatgcaggttggaggatatgtgattggttacaaagggctcacactagtcactgtaagaggagctggacacatggttccaagtgaccaaccataccgagc |
121 |
Q |
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| T |
6206569 |
atatgcaggttggagggtatgtgattggttacaaagggctcacactagtcactgtaagaggagctggacacatggttccaactgaccaaccataccgagc |
6206470 |
T |
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| Q |
122 |
actaaccatgatctcatctttccttcttggacaacttcctcctcaattnnnnnnntcttaagtctattcagtgtatcaataaaatttatgtgaaaaatt- |
220 |
Q |
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| T |
6206469 |
actaaccatgatctcatctttccttcttggacaacttcctcctcaatt---aaaatcttaagtctattcagtgtatcaataaaatttatgtgaaaaattt |
6206373 |
T |
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| Q |
221 |
-----------tacaataattcatcaaaatatgtgtgctccatttctaaattat |
263 |
Q |
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| T |
6206372 |
gacgagtttcatacaataattcatcaaaatatgtgtgctctatttctaaattat |
6206319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 6214324 - 6214087
Alignment:
| Q |
17 |
attatatatgcaggttggaggatatgtgattggttacaaagggctcacactagtcactgtaagaggagctggacacatggttccaagtgaccaaccatac |
116 |
Q |
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| T |
6214324 |
attatatatgcaggttggagggtatgtgattggttacaaagggctcacactaatcactgtaagaggagctgggcacatggttccaactgaccaaccatac |
6214225 |
T |
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| Q |
117 |
cgagcactaaccatgatctcatctttccttcttggacaacttcctcctcaattnnnnnnntcttaagtctattcagtgtatcaataaaatttatgtgaaa |
216 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||| |||||||| |
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| T |
6214224 |
cgagcactaaccgtgatctcatctttccttcttggacaacttcctcctcaattaaaatcttaattagtctattcagtgtatcaataaaatgtatgtgaac |
6214125 |
T |
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| Q |
217 |
aatttacaataattcatcaaaatatgtgtgctccattt |
254 |
Q |
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| T |
6214124 |
aatttacaataattcatcaaaatatgtgtgctctattt |
6214087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 6176756 - 6176609
Alignment:
| Q |
22 |
atatgcaggttggaggatatgtgattggttacaaagggctcacactagtcactgtaagaggagctggacacatggttccaagtgaccaaccataccgagc |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6176756 |
atatgcaggttggaggatatgtgattggttacaaagggctcgcacttgttactgttagaggagctggacacatggttccaagtgaccaaccataccgagc |
6176657 |
T |
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| Q |
122 |
actaaccatgatctcatctttccttcttggacaacttcctcctcaatt |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6176656 |
actaaccatgatctcatctttccttcttggacaacttcctcctcaatt |
6176609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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