View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14812_low_17 (Length: 271)

Name: NF14812_low_17
Description: NF14812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14812_low_17
NF14812_low_17
[»] chr7 (18 HSPs)
chr7 (1-98)||(32602869-32602966)
chr7 (217-271)||(32603124-32603178)
chr7 (145-196)||(30310115-30310166)
chr7 (143-194)||(33779153-33779204)
chr7 (142-192)||(43459453-43459503)
chr7 (142-192)||(30311537-30311587)
chr7 (142-193)||(40811337-40811388)
chr7 (142-193)||(47456443-47456494)
chr7 (144-194)||(6173520-6173570)
chr7 (142-192)||(32256463-32256513)
chr7 (142-194)||(32602929-32602981)
chr7 (151-195)||(32603073-32603117)
chr7 (142-177)||(3414902-3414937)
chr7 (142-192)||(4300116-4300166)
chr7 (145-191)||(40508377-40508423)
chr7 (142-192)||(47454335-47454385)
chr7 (145-194)||(33096865-33096914)
chr7 (58-98)||(33096862-33096902)
[»] chr2 (12 HSPs)
chr2 (142-189)||(36010578-36010625)
chr2 (142-192)||(17459251-17459301)
chr2 (142-192)||(32470643-32470693)
chr2 (142-193)||(43033079-43033130)
chr2 (144-194)||(6030540-6030590)
chr2 (142-193)||(6028742-6028793)
chr2 (142-193)||(11315930-11315981)
chr2 (142-192)||(11547657-11547707)
chr2 (144-193)||(32469145-32469194)
chr2 (142-190)||(28561368-28561416)
chr2 (142-194)||(28562877-28562929)
chr2 (64-96)||(36011726-36011758)
[»] chr3 (25 HSPs)
chr3 (142-195)||(40244182-40244235)
chr3 (142-193)||(37736149-37736200)
chr3 (144-191)||(34819354-34819401)
chr3 (142-192)||(12108051-12108101)
chr3 (59-96)||(37735300-37735337)
chr3 (142-194)||(37735302-37735354)
chr3 (142-189)||(18458725-18458772)
chr3 (61-98)||(40244183-40244220)
chr3 (144-193)||(53624431-53624480)
chr3 (144-196)||(8795934-8795986)
chr3 (142-194)||(50810902-50810954)
chr3 (142-194)||(50864910-50864962)
chr3 (142-193)||(36176575-36176626)
chr3 (142-193)||(38240903-38240954)
chr3 (144-191)||(55328375-55328422)
chr3 (142-187)||(18442255-18442300)
chr3 (142-187)||(19487329-19487374)
chr3 (142-195)||(40364314-40364367)
chr3 (144-193)||(53187556-53187605)
chr3 (142-194)||(3209999-3210051)
chr3 (142-194)||(18197143-18197195)
chr3 (144-196)||(35370907-35370959)
chr3 (62-98)||(38240903-38240939)
chr3 (142-194)||(50809417-50809469)
chr3 (142-194)||(50866393-50866445)
[»] chr4 (22 HSPs)
chr4 (137-192)||(4871427-4871482)
chr4 (142-196)||(24426333-24426387)
chr4 (142-190)||(42810271-42810319)
chr4 (142-197)||(4128986-4129041)
chr4 (142-192)||(390215-390265)
chr4 (142-192)||(1188841-1188891)
chr4 (147-193)||(15450148-15450194)
chr4 (145-193)||(2312553-2312601)
chr4 (142-194)||(6348151-6348203)
chr4 (142-201)||(1190260-1190318)
chr4 (142-189)||(27851000-27851047)
chr4 (53-96)||(49344095-49344138)
chr4 (142-192)||(44501516-44501566)
chr4 (142-192)||(44503746-44503796)
chr4 (142-191)||(1829752-1829801)
chr4 (144-192)||(1794409-1794457)
chr4 (145-193)||(1831334-1831382)
chr4 (142-194)||(2310919-2310971)
chr4 (62-98)||(2312565-2312601)
chr4 (142-194)||(7707584-7707636)
chr4 (142-194)||(10167421-10167473)
chr4 (62-98)||(15450158-15450194)
[»] chr1 (12 HSPs)
chr1 (142-194)||(34352024-34352076)
chr1 (142-193)||(45585077-45585128)
chr1 (142-194)||(15071338-15071390)
chr1 (142-193)||(14470853-14470904)
chr1 (142-193)||(52627512-52627563)
chr1 (142-198)||(24499723-24499779)
chr1 (142-194)||(46111556-46111608)
chr1 (142-192)||(52628941-52628991)
chr1 (142-194)||(15232748-15232800)
chr1 (140-196)||(16123281-16123337)
chr1 (141-193)||(23091348-23091400)
chr1 (54-98)||(46111571-46111615)
[»] chr6 (5 HSPs)
chr6 (142-193)||(6452579-6452630)
chr6 (142-192)||(232174-232224)
chr6 (142-191)||(7310275-7310324)
chr6 (62-98)||(6452594-6452630)
chr6 (64-96)||(7310275-7310307)
[»] chr5 (11 HSPs)
chr5 (142-193)||(30859240-30859291)
chr5 (142-192)||(22049204-22049254)
chr5 (142-193)||(22047729-22047780)
chr5 (142-191)||(41798015-41798064)
chr5 (142-194)||(22308867-22308919)
chr5 (142-193)||(325253-325304)
chr5 (144-195)||(39603848-39603899)
chr5 (142-192)||(30912230-30912280)
chr5 (140-192)||(22307506-22307558)
chr5 (142-194)||(30910737-30910789)
chr5 (142-194)||(34894145-34894197)
[»] scaffold0034 (1 HSPs)
scaffold0034 (137-195)||(109808-109866)
[»] chr8 (25 HSPs)
chr8 (142-192)||(32797136-32797186)
chr8 (142-192)||(45281256-45281306)
chr8 (142-194)||(32695343-32695395)
chr8 (142-189)||(41629709-41629756)
chr8 (145-196)||(42872260-42872311)
chr8 (142-194)||(6397779-6397831)
chr8 (142-194)||(28418802-28418854)
chr8 (142-194)||(32798600-32798652)
chr8 (142-173)||(211612-211643)
chr8 (145-192)||(212783-212830)
chr8 (145-192)||(239424-239471)
chr8 (142-173)||(240613-240644)
chr8 (142-173)||(725235-725266)
chr8 (145-192)||(726406-726453)
chr8 (145-192)||(792779-792826)
chr8 (142-173)||(793968-793999)
chr8 (145-192)||(798907-798954)
chr8 (137-192)||(8570116-8570171)
chr8 (142-193)||(28420242-28420293)
chr8 (142-199)||(13116321-13116378)
chr8 (57-98)||(32797130-32797171)
chr8 (144-192)||(12850465-12850513)
chr8 (142-194)||(26696528-26696580)
chr8 (58-98)||(28418799-28418839)
chr8 (142-194)||(42098559-42098611)
[»] scaffold0077 (2 HSPs)
scaffold0077 (142-194)||(54253-54305)
scaffold0077 (56-98)||(54268-54310)
[»] scaffold0031 (2 HSPs)
scaffold0031 (142-192)||(123967-124017)
scaffold0031 (142-191)||(125301-125350)
[»] scaffold0019 (1 HSPs)
scaffold0019 (142-174)||(61867-61899)


Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 32602869 - 32602966
Alignment:
Q  1 aaccctcatatggtactaaacaaacatgaaatacttcacaacacaaagaaccatataatttaggcttatttgatccattggtcctttaaataatttca 98  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32602869 aaccctcatgtggtactaaacaaacatgaaatacttcacaacacaaagaaccatataatttaggcttatttgatccattggtccttcaaataatttca 32602966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 32603124 - 32603178
Alignment:
Q  217 atatacctgtttaacggggcaagtaaaatagtacttagcaccttccatctctctt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32603124 atatacctgtttaacggggcaagtaaaatagtacttagcaccttccatctctctt 32603178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 30310166 - 30310115
Alignment:
Q  145 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctatt 196  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  30310166 aaaatgaaaacttgaaattatttaagggactattggatcaaataagcctatt 30310115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 33779153 - 33779204
Alignment:
Q  143 ccaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  33779153 ccaaaatgaaaacttgaaattatttaggggactaatggatcaaataagccta 33779204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 43459503 - 43459453
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  43459503 accaaaatgaaaacttgaaattatttaggggactaatggatcaaataagcc 43459453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 30311537 - 30311587
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||||||    
T  30311537 accaaaatgaaaatttgaaattatttaggggactaatggatcaaataagcc 30311587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 40811388 - 40811337
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||||| ||||||||||| |||||| | ||||||||||||||||    
T  40811388 accaaaatgaaaacttgaaattatttgagggaccattggatcaaataagcct 40811337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 47456443 - 47456494
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||||| ||||||||||| |||||| | ||||||||||||||||    
T  47456443 accaaaatgaaaacttgaaattatttgagggaccattggatcaaataagcct 47456494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 6173520 - 6173570
Alignment:
Q  144 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||| ||||||||||| |||||| | |||||||||||||||||    
T  6173520 caaaatgaaaacttgaaattatttgagggaccattggatcaaataagccta 6173570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 32256463 - 32256513
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||||| ||||||||||| |||||| | |||||||||||||||    
T  32256463 accaaaatgaaaacttgaaattatttgagggaccattggatcaaataagcc 32256513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 32602981 - 32602929
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||| ||||| ||||||||||| | |||| |||||||||||||||||||    
T  32602981 accaaaataaaaacttgaaattatttgaaggaccaatggatcaaataagccta 32602929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 32603073 - 32603117
Alignment:
Q  151 aaaacatgaaattatttaagggactaatggatcaaataagcctat 195  Q
    ||||||||||||||||||||| | | |||||||||||||||||||    
T  32603073 aaaacatgaaattatttaaggaaatgatggatcaaataagcctat 32603117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 3414902 - 3414937
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaa 177  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3414902 accaaaatgaaaacatgaaattatttaggggactaa 3414937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 4300116 - 4300166
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||||| |||||||||| | ||||| | |||||||||||||||    
T  4300116 accaaaatgaaaacttgaaattattcaggggacgattggatcaaataagcc 4300166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 40508423 - 40508377
Alignment:
Q  145 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagc 191  Q
    ||||||||||| |||||||||||| ||||| | ||||||||||||||    
T  40508423 aaaatgaaaacttgaaattatttaggggaccattggatcaaataagc 40508377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 47454385 - 47454335
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||| | ||||||||||| |||||| | |||||||||||||||    
T  47454385 accaaaatgaaagcttgaaattatttgagggaccactggatcaaataagcc 47454335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 33096914 - 33096865
Alignment:
Q  145 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    ||||||| ||| ||||||||||| |||||| | |||||||||||||||||    
T  33096914 aaaatgagaacttgaaattatttgagggaccattggatcaaataagccta 33096865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 33096862 - 33096902
Alignment:
Q  58 atttaggcttatttgatccattggtcctttaaataatttca 98  Q
    |||||||||||||||||||| |||||| | |||||||||||    
T  33096862 atttaggcttatttgatccaatggtccctcaaataatttca 33096902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 36010625 - 36010578
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataa 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36010625 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataa 36010578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 17459301 - 17459251
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17459301 accaaaatgaaaacttgaaattatttaagggactaatggatcaaataagcc 17459251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 32470643 - 32470693
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  32470643 accaaaataaaaacttgaaattatttaggggactaatggatcaaataagcc 32470693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 43033130 - 43033079
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||||| |||||||||||||||||  | ||||||||||||||||    
T  43033130 accaaaatgaaaacttgaaattatttaagggatcattggatcaaataagcct 43033079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 6030540 - 6030590
Alignment:
Q  144 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||| | ||||||||| |||||||| |||||||||||||||||    
T  6030540 caaaatgaaaacttcaaattatttgagggactattggatcaaataagccta 6030590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 6028793 - 6028742
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||||  |||||||||||| | ||| ||||||||||||||||||    
T  6028793 accaaaatgaaaatttgaaattatttaggagaccaatggatcaaataagcct 6028742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 11315981 - 11315930
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||||| |||||||||||| ||||| |||| || ||||||||||    
T  11315981 accaaaatgaaaacttgaaattatttaggggaccaatgaattaaataagcct 11315930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 11547707 - 11547657
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||||| ||||||||||||| |||| |||  ||||||||||||    
T  11547707 accaaaatgaaaacttgaaattatttaaaggaccaataaatcaaataagcc 11547657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 32469194 - 32469145
Alignment:
Q  144 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||| ||||||||||| |||||| | || |||||||||||||    
T  32469194 caaaatgaaaacttgaaattatttgagggaccattgaatcaaataagcct 32469145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 28561416 - 28561368
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataag 190  Q
    |||||||||||||| | |||||||||||||||| | || ||||||||||    
T  28561416 accaaaatgaaaacttaaaattatttaagggaccattgaatcaaataag 28561368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 28562877 - 28562929
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||  ||||||||||| |||||| | || ||||||||||||||    
T  28562877 accaaaatgaaaatttgaaattatttgagggaccattgaatcaaataagccta 28562929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 36011758 - 36011726
Alignment:
Q  64 gcttatttgatccattggtcctttaaataattt 96  Q
    ||||||||||||||||| |||||||||||||||    
T  36011758 gcttatttgatccattgatcctttaaataattt 36011726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 40244235 - 40244182
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctat 195  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  40244235 accaaaatgaaaacttgaaattatttaagggaccaatggatcaaataagcctat 40244182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 37736149 - 37736200
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  37736149 accaaaatgaaaacatgaaattatttaagggactaatgaatcacataagcct 37736200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 34819354 - 34819401
Alignment:
Q  144 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagc 191  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  34819354 caaaatgaaaacttgaaattatttgagggactaatggatcaaataagc 34819401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 12108051 - 12108101
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||||| |||||||||||||||||||| || ||||||||||||    
T  12108051 accaaaatgaaaacttgaaattatttaagggactattgaatcaaataagcc 12108101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 37735300 - 37735337
Alignment:
Q  59 tttaggcttatttgatccattggtcctttaaataattt 96  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37735300 tttaggcttatttgatccattggtcctttaaataattt 37735337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 37735354 - 37735302
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||| | ||||||||||| |||| |||||||||||||||||||    
T  37735354 accaaaatgaaaacttaaaattatttaaaggaccaatggatcaaataagccta 37735302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 18458725 - 18458772
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataa 189  Q
    |||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  18458725 accaaaataaaaacttgaaattatttaggggactaatggatcaaataa 18458772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 40244183 - 40244220
Alignment:
Q  61 taggcttatttgatccattggtcctttaaataatttca 98  Q
    |||||||||||||||||||||||| |||||||||||||    
T  40244183 taggcttatttgatccattggtcccttaaataatttca 40244220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 53624431 - 53624480
Alignment:
Q  144 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||| ||||||||||| |||||| | ||||||||||||||||    
T  53624431 caaaatgaaaacttgaaattatttgagggaccattggatcaaataagcct 53624480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 8795986 - 8795934
Alignment:
Q  144 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctatt 196  Q
    |||||||||||| |||||||||||| ||||  |||||||| ||||||||||||    
T  8795986 caaaatgaaaacttgaaattatttaggggatcaatggatctaataagcctatt 8795934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 50810902 - 50810954
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||  |||||||||||||||||| |||||||| | ||||||||    
T  50810902 accaaaatgaaaaattgaaattatttaagggaccaatggatctattaagccta 50810954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 50864962 - 50864910
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||  |||||||||||||||||| |||||||| | ||||||||    
T  50864962 accaaaatgaaaaattgaaattatttaagggaccaatggatctattaagccta 50864910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 36176575 - 36176626
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    ||||||||||||||||||||||| | | ||||| | ||||||||||||||||    
T  36176575 accaaaatgaaaacatgaaattaatcaggggaccattggatcaaataagcct 36176626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 38240954 - 38240903
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||| ||||  |||||||||| ||||||| ||||||||||||||||||    
T  38240954 accaaaataaaaatttgaaattattcaagggaccaatggatcaaataagcct 38240903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 55328375 - 55328422
Alignment:
Q  144 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagc 191  Q
    |||||||||||| |||||||| ||| | ||||||||||||||||||||    
T  55328375 caaaatgaaaacttgaaattaattaggagactaatggatcaaataagc 55328422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 18442300 - 18442255
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaat 187  Q
    |||||||||||||| ||||||||||||  |||| ||||||||||||    
T  18442300 accaaaatgaaaacttgaaattatttagaggaccaatggatcaaat 18442255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 19487374 - 19487329
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaat 187  Q
    |||||||||||||| ||||||||||||  |||| ||||||||||||    
T  19487374 accaaaatgaaaacttgaaattatttagaggaccaatggatcaaat 19487329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 40364367 - 40364314
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctat 195  Q
    |||||||||||||| |||||||||||| || || | | ||||||||||||||||    
T  40364367 accaaaatgaaaacttgaaattatttagggaaccattagatcaaataagcctat 40364314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 53187605 - 53187556
Alignment:
Q  144 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||| |||||||||||| ||||| | | ||||||||||||||    
T  53187605 caaaatgaaaacttgaaattatttaggggaccattcgatcaaataagcct 53187556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 3209999 - 3210051
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||  | |||||||||||||||| | || ||||||||||||||    
T  3209999 accaaaatgaaaatttaaaattatttaagggaccattgaatcaaataagccta 3210051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 18197195 - 18197143
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||  ||||||||||| ||||||   |||||||||||||||||    
T  18197195 accaaaatgaaaatttgaaattatttgagggacatttggatcaaataagccta 18197143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 35370959 - 35370907
Alignment:
Q  144 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctatt 196  Q
    |||||||||||||||||||||  |||||||| ||  |||| ||||||||||||    
T  35370959 caaaatgaaaacatgaaattaaataagggaccaaacgatctaataagcctatt 35370907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 38240903 - 38240939
Alignment:
Q  62 aggcttatttgatccattggtcctttaaataatttca 98  Q
    ||||||||||||||||||||||| || ||||||||||    
T  38240903 aggcttatttgatccattggtcccttgaataatttca 38240939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 50809469 - 50809417
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||  |||||||||||||||||| ||| |||| | ||||||||    
T  50809469 accaaaatgaaaaattgaaattatttaagggaccaatagatctattaagccta 50809417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 50866393 - 50866445
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||  |||||||||||||||||| ||| |||| | ||||||||    
T  50866393 accaaaatgaaaaattgaaattatttaagggaccaatagatctattaagccta 50866445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 4871427 - 4871482
Alignment:
Q  137 gtagaaccaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||||||||||||||||||||||  ||||| |||||||||||||||||    
T  4871427 gtagaaccaaaatgaaaacatgaaattattttggggaccaatggatcaaataagcc 4871482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 24426387 - 24426333
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctatt 196  Q
    |||||||||||||| ||||||||||| |||||| | |||||||||||||||||||    
T  24426387 accaaaatgaaaacttgaaattatttgagggaccattggatcaaataagcctatt 24426333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 42810271 - 42810319
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataag 190  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||||    
T  42810271 accaaaatgaaaagttgaaattatttaagggactattggatcaaataag 42810319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 4129041 - 4128986
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctatta 197  Q
    |||||||||||||| ||||||||||| ||| || | ||||||||||||||||||||    
T  4129041 accaaaatgaaaacttgaaattatttgaggaaccattggatcaaataagcctatta 4128986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 390265 - 390215
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||||| |||||||||||| ||||| |||| ||||||||||||    
T  390265 accaaaatgaaaacttgaaattatttaggggaccaatgaatcaaataagcc 390215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 1188891 - 1188841
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||| ||||| ||||||||||| |||||||| |||||||||||||||    
T  1188891 accaaaataaaaacttgaaattatttgagggactattggatcaaataagcc 1188841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 15450148 - 15450194
Alignment:
Q  147 aatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    ||||||||| |||||||||||||||||| |||| |||||||||||||    
T  15450148 aatgaaaacctgaaattatttaagggaccaatgaatcaaataagcct 15450194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 2312553 - 2312601
Alignment:
Q  145 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||| |||| ||||||||| |||||||| ||||||||||||||||||    
T  2312553 aaaatggaaacttgaaattatctaagggaccaatggatcaaataagcct 2312601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 6348203 - 6348151
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||| ||||||||||| |||||| | | |||||||||||||||    
T  6348203 accaaaatgaaaacttgaaattatttgagggaccatttgatcaaataagccta 6348151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 1190260 - 1190318
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctattaattt 201  Q
    |||||||||||||| | ||||||||| |||||| ||||| ||||||||||| ||||||||    
T  1190260 accaaaatgaaaacttaaaattatttgagggaccaatggttcaaataagcc-attaattt 1190318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 27851000 - 27851047
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataa 189  Q
    |||||||||||||| ||||||||||| |||||| | ||||||||||||    
T  27851000 accaaaatgaaaacttgaaattatttgagggaccattggatcaaataa 27851047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 49344138 - 49344095
Alignment:
Q  53 atataatttaggcttatttgatccattggtcctttaaataattt 96  Q
    |||| |||||||||||||||||||| ||||||| ||||||||||    
T  49344138 atattatttaggcttatttgatccaatggtcctctaaataattt 49344095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 44501566 - 44501516
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||| ||||||||| ||||||||||| |||||| ||||| |||||||||||    
T  44501566 accagaatgaaaacttgaaattatttgagggaccaatggttcaaataagcc 44501516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 44503746 - 44503796
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||| ||||| ||||||||||| |||||||| || ||||||||||||    
T  44503746 accaaaataaaaacttgaaattatttgagggactattgaatcaaataagcc 44503796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 1829801 - 1829752
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagc 191  Q
    |||||||||||||| ||||||||||| ||||||   ||||||||||||||    
T  1829801 accaaaatgaaaacttgaaattatttgagggaccgttggatcaaataagc 1829752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 1794457 - 1794409
Alignment:
Q  144 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||| ||||||||||| |||||| | || ||||||||||||    
T  1794457 caaaatgaaaacttgaaattatttgagggaccattgaatcaaataagcc 1794409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 1831334 - 1831382
Alignment:
Q  145 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    ||||||||||| |||||||| || |||||| | ||||||||||||||||    
T  1831334 aaaatgaaaacttgaaattaattgagggaccattggatcaaataagcct 1831382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 2310971 - 2310919
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||| |||||||| |||  |||| | |||||||||||||||||    
T  2310971 accaaaatgaaaacttgaaattaattagaggaccattggatcaaataagccta 2310919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 2312601 - 2312565
Alignment:
Q  62 aggcttatttgatccattggtcctttaaataatttca 98  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  2312601 aggcttatttgatccattggtcccttagataatttca 2312565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 7707636 - 7707584
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||||||||||||  |||||||||||  |||| ||||| ||||    
T  7707636 accaaaatgaaaacatgaaattaaataagggactaaaagatctaataaaccta 7707584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 10167473 - 10167421
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||||||||||||  |||||||| ||  |||| ||||||||||    
T  10167473 accaaaatgaaaacatgaaattaaataagggaccaaacgatctaataagccta 10167421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 15450194 - 15450158
Alignment:
Q  62 aggcttatttgatccattggtcctttaaataatttca 98  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  15450194 aggcttatttgattcattggtcccttaaataatttca 15450158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 34352024 - 34352076
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  34352024 accaaaatgaaaacttaaaattatttaagggactattggatcaaataagccta 34352076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 45585077 - 45585128
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  45585077 accaaaatgaaaacttgaaattatttgagggactattggatcaaataagcct 45585128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 15071390 - 15071338
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||| |||||||||||| ||||| ||||||| |||||||||||    
T  15071390 accaaaatgaaaacttgaaattatttaggggaccaatggattaaataagccta 15071338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 14470904 - 14470853
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  14470904 accaaaatgaaaacttgaaattatttaggggaccattggatcaaataagcct 14470853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 52627563 - 52627512
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||||| ||||||||||| |||||| | ||||||||||||||||    
T  52627563 accaaaatgaaaacttgaaattatttgagggaccattggatcaaataagcct 52627512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 24499723 - 24499779
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctattaa 198  Q
    |||||||||||||| |||||||||||| ||||| ||   ||||||||||||||||||    
T  24499723 accaaaatgaaaacttgaaattatttaggggaccaacaaatcaaataagcctattaa 24499779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 46111556 - 46111608
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||| ||||| |||||||||||||||||| | || ||||||||||||||    
T  46111556 accaaaataaaaacttgaaattatttaagggaccattgaatcaaataagccta 46111608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 52628941 - 52628991
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||| ||||| ||||||||||||||||||  || |||||||||||||    
T  52628941 accaaaattaaaacttgaaattatttaagggaccgatagatcaaataagcc 52628991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 15232800 - 15232748
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||||||||||||  |||||||| ||  |||| ||||||||||    
T  15232800 accaaaatgaaaacatgaaattaaataagggaccaaatgatctaataagccta 15232748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 16123337 - 16123281
Alignment:
Q  140 gaaccaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctatt 196  Q
    |||||||||||||||| | ||||||||||  |||  |||| ||||||||||||||||    
T  16123337 gaaccaaaatgaaaactttaaattatttagaggatcaatgaatcaaataagcctatt 16123281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 23091400 - 23091348
Alignment:
Q  141 aaccaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    ||||||||||||||  |||||||| ||| ||||| ||| ||||||||||||||    
T  23091400 aaccaaaatgaaaatgtgaaattagttaggggaccaatagatcaaataagcct 23091348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 46111615 - 46111571
Alignment:
Q  54 tataatttaggcttatttgatccattggtcctttaaataatttca 98  Q
    |||| |||||||||||||||| || |||||| |||||||||||||    
T  46111615 tatattttaggcttatttgattcaatggtcccttaaataatttca 46111571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 6452579 - 6452630
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  6452579 accaaaatgaaaacttgaaattatttaggggaccaatggatcaaataagcct 6452630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 232224 - 232174
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||||  |||||||||||||||||| |||||||| | ||||||    
T  232224 accaaaatgaaaaattgaaattatttaagggaccaatggatctattaagcc 232174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 7310324 - 7310275
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagc 191  Q
    |||||||||||||| | ||||||||||| ||||  |||||||||||||||    
T  7310324 accaaaatgaaaacttaaaattatttaaaggaccgatggatcaaataagc 7310275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 6452630 - 6452594
Alignment:
Q  62 aggcttatttgatccattggtcctttaaataatttca 98  Q
    |||||||||||||||||||||||  ||||||||||||    
T  6452630 aggcttatttgatccattggtcccctaaataatttca 6452594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 7310275 - 7310307
Alignment:
Q  64 gcttatttgatccattggtcctttaaataattt 96  Q
    ||||||||||||||| |||||||||||||||||    
T  7310275 gcttatttgatccatcggtcctttaaataattt 7310307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 30859240 - 30859291
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  30859240 accaaaatgaaaacttgaaattatttgagggactaatgaatcaaataagcct 30859291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 22049204 - 22049254
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||||||||    
T  22049204 accaaaatgaaaacttgaaattatttaggggactaatggttcaaataagcc 22049254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 22047780 - 22047729
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||||| |||||||| ||||||||| | ||||||||||||||||    
T  22047780 accaaaatgaaaacttgaaattaattaagggaccattggatcaaataagcct 22047729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 41798015 - 41798064
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagc 191  Q
    |||||||| ||||| ||||||||||| |||||| ||||||||||||||||    
T  41798015 accaaaataaaaacttgaaattatttgagggaccaatggatcaaataagc 41798064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 22308867 - 22308919
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    ||||||||||||||||||||||||||| ||||| ||  |||| ||||||||||    
T  22308867 accaaaatgaaaacatgaaattatttaggggaccaaacgatctaataagccta 22308919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 325253 - 325304
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||||| ||||||||||| |||||| | | ||||||||||||||    
T  325253 accaaaatgaaaacttgaaattatttgagggaccattagatcaaataagcct 325304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 39603899 - 39603848
Alignment:
Q  144 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctat 195  Q
    |||||||||||| ||||||||||| |||||  ||||||||||||||| ||||    
T  39603899 caaaatgaaaacttgaaattatttgagggatcaatggatcaaataagactat 39603848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 30912230 - 30912280
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||||||||||||||  |||||||||||  |||| ||||||||    
T  30912230 accaaaatgaaaacatgaaattaaataagggactaaacgatctaataagcc 30912280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 22307558 - 22307506
Alignment:
Q  140 gaaccaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||||||||||||||| |||| ||||| ||  |||| ||||||||    
T  22307558 gaaccaaaatgaaaacatgaaattgtttaggggaccaaacgatctaataagcc 22307506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 30910789 - 30910737
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||||||||||||  |||||||| ||  |||| ||||||||||    
T  30910789 accaaaatgaaaacatgaaattaaataagggaccaaacgatctaataagccta 30910737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 34894197 - 34894145
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||   ||||||| ||||||||| |||||||| ||||||||||    
T  34894197 accaaaatgaaaaatggaaattaattaagggaccaatggatctaataagccta 34894145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 109808 - 109866
Alignment:
Q  137 gtagaaccaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctat 195  Q
    |||| |||||||||||||| |||||||||||||||||| | || |||||||||||||||    
T  109808 gtaggaccaaaatgaaaacttgaaattatttaagggaccattgaatcaaataagcctat 109866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 32797186 - 32797136
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  32797186 accaaaatgaaaacttgaaattatttaagggaccaatagatcaaataagcc 32797136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 45281256 - 45281306
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  45281256 accaaaatgaaaacttgaaattatttgagggactattggatcaaataagcc 45281306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 32695343 - 32695395
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||| ||||||||||| |||||| |||| ||||||||||||||    
T  32695343 accaaaatgaaaacttgaaattatttgagggaccaatgaatcaaataagccta 32695395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 41629756 - 41629709
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataa 189  Q
    |||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  41629756 accaaaataaaaacttgaaattatttaggggactaatggatcaaataa 41629709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 42872260 - 42872311
Alignment:
Q  145 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctatt 196  Q
    ||||||||||| | |||||||||||||||| | |||||||||||||||||||    
T  42872260 aaaatgaaaacttaaaattatttaagggaccattggatcaaataagcctatt 42872311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 6397831 - 6397779
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    ||||||||||||| |||||||||||||   || ||||||||||||||||||||    
T  6397831 accaaaatgaaaatatgaaattatttagaagattaatggatcaaataagccta 6397779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 28418854 - 28418802
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||  |||||||||||||||||| |||||||| | ||||||||    
T  28418854 accaaaatgaaaaattgaaattatttaagggaccaatggatctattaagccta 28418802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 32798600 - 32798652
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||| ||||||||||| |||||| | || ||||||||||||||    
T  32798600 accaaaatgaaaacttgaaattatttgagggaccattgcatcaaataagccta 32798652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 173
Target Start/End: Complemental strand, 211643 - 211612
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaaggga 173  Q
    ||||||||||||||||||||||||||||||||    
T  211643 accaaaatgaaaacatgaaattatttaaggga 211612  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 212783 - 212830
Alignment:
Q  145 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    ||||||||||  |||||||||||  |||||||||||||||||||||||    
T  212783 aaaatgaaaatctgaaattatttgggggactaatggatcaaataagcc 212830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 239471 - 239424
Alignment:
Q  145 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    ||||||||||  |||||||||||  |||||||||||||||||||||||    
T  239471 aaaatgaaaatctgaaattatttgggggactaatggatcaaataagcc 239424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 240613 - 240644
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaaggga 173  Q
    ||||||||||||||||||||||||||||||||    
T  240613 accaaaatgaaaacatgaaattatttaaggga 240644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 173
Target Start/End: Complemental strand, 725266 - 725235
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaaggga 173  Q
    ||||||||||||||||||||||||||||||||    
T  725266 accaaaatgaaaacatgaaattatttaaggga 725235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 726406 - 726453
Alignment:
Q  145 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    ||||||||||  |||||||||||  |||||||||||||||||||||||    
T  726406 aaaatgaaaatctgaaattatttgggggactaatggatcaaataagcc 726453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 792826 - 792779
Alignment:
Q  145 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    ||||||||||  |||||||||||  |||||||||||||||||||||||    
T  792826 aaaatgaaaatctgaaattatttgggggactaatggatcaaataagcc 792779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 793968 - 793999
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaaggga 173  Q
    ||||||||||||||||||||||||||||||||    
T  793968 accaaaatgaaaacatgaaattatttaaggga 793999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 798907 - 798954
Alignment:
Q  145 aaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    ||||||||||  |||||||||||  |||||||||||||||||||||||    
T  798907 aaaatgaaaatctgaaattatttgggggactaatggatcaaataagcc 798954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 8570171 - 8570116
Alignment:
Q  137 gtagaaccaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||| |||||||||||||| |||||||| ||| ||||| | |||||||||||||||    
T  8570171 gtaggaccaaaatgaaaacgtgaaattaattaggggaccattggatcaaataagcc 8570116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 28420242 - 28420293
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcct 193  Q
    |||||||||||||  |||||||||||||||||| |||||||| | |||||||    
T  28420242 accaaaatgaaaaattgaaattatttaagggaccaatggatctattaagcct 28420293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 13116378 - 13116321
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcctattaat 199  Q
    |||||||||||||||||||||||  |||||||| ||  |||| |||||||||| ||||    
T  13116378 accaaaatgaaaacatgaaattaaataagggaccaaacgatctaataagcctactaat 13116321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 32797130 - 32797171
Alignment:
Q  57 aatttaggcttatttgatccattggtcctttaaataatttca 98  Q
    ||||| ||||||||||||| |||||||| |||||||||||||    
T  32797130 aattttggcttatttgatctattggtcccttaaataatttca 32797171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 12850465 - 12850513
Alignment:
Q  144 caaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||  ||||||||||| |||||| | |||||||||||||||    
T  12850465 caaaatgaaaatttgaaattatttgagggaccattggatcaaataagcc 12850513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 26696580 - 26696528
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||| |||||||| ||| ||||| | || ||||||||||||||    
T  26696580 accaaaatgaaaacttgaaattaattaggggaccattgaatcaaataagccta 26696528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 28418799 - 28418839
Alignment:
Q  58 atttaggcttatttgatccattggtcctttaaataatttca 98  Q
    ||||||||||| | ||||||||||||| |||||||||||||    
T  28418799 atttaggcttaatagatccattggtcccttaaataatttca 28418839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 42098611 - 42098559
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||||||||||||||||||  |||||||| ||  |||| ||||||||||    
T  42098611 accaaaatgaaaacatgaaattaaataagggaccaaacgatctaataagccta 42098559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 54253 - 54305
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagccta 194  Q
    |||||||| ||||| ||||||||||| |||||| |||||||||||||||||||    
T  54253 accaaaattaaaacttgaaattatttgagggaccaatggatcaaataagccta 54305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 54310 - 54268
Alignment:
Q  56 taatttaggcttatttgatccattggtcctttaaataatttca 98  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  54310 taatttaggcttatttgatccattggtccctcaaataatttca 54268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 124017 - 123967
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagcc 192  Q
    |||||||||||||| ||||||||||| | |||| | |||||||||||||||    
T  124017 accaaaatgaaaacttgaaattatttgaaggaccattggatcaaataagcc 123967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 125301 - 125350
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggactaatggatcaaataagc 191  Q
    |||||||||||||  ||||||||||| |||||| | ||||||||||||||    
T  125301 accaaaatgaaaatttgaaattatttgagggaccattggatcaaataagc 125350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 61899 - 61867
Alignment:
Q  142 accaaaatgaaaacatgaaattatttaagggac 174  Q
    ||||||||||||||||||||||||||| |||||    
T  61899 accaaaatgaaaacatgaaattatttaggggac 61867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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