View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14812_low_20 (Length: 249)
Name: NF14812_low_20
Description: NF14812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14812_low_20 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 372599 - 372816
Alignment:
| Q |
14 |
aagcataggaaattaaaatggcattttatttaagttaaaagccaaccaatgggccggaaaacaatattgaaatatgaatgaaaccttttgaagacagatt |
113 |
Q |
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| T |
372599 |
aagcataggaaattaaaatggcattttatttaagttaaaagtcaaccaatgggccggaaaacaatattgaaatatgaatgaaaccttttgaagacagatt |
372698 |
T |
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| Q |
114 |
catcaattcagttgtcaagaaactatgtttggccctaaatacgcgttaccataaaaatttgaaatcccaaaaaccgaaatgctcaaggaaccaaacaagt |
213 |
Q |
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| T |
372699 |
catcaattcagttgtcaagaaactatgtttggtcctaaatatgcgttaccataaaaagttgaaatcccaaaaatcgaaatgctcaaggaaccagacaagt |
372798 |
T |
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| Q |
214 |
tggagatcgaggtgacat |
231 |
Q |
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| T |
372799 |
tggagatcgaggtgacat |
372816 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 13271028 - 13270971
Alignment:
| Q |
32 |
tggcattttatttaagttaaaagccaaccaatgggccggaaaacaatattgaaatatg |
89 |
Q |
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| T |
13271028 |
tggcattttcattaaattaaaacccaactaatgggccagaaaacaatattgaaatatg |
13270971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 18757101 - 18757145
Alignment:
| Q |
24 |
aattaaaatggcattttatttaagttaaaagccaaccaatgggcc |
68 |
Q |
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| T |
18757101 |
aattaaaatggcattttaattagattaaaagccaactaatgggcc |
18757145 |
T |
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