View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14812_low_3 (Length: 612)
Name: NF14812_low_3
Description: NF14812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14812_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 148 - 597
Target Start/End: Complemental strand, 13898614 - 13898165
Alignment:
| Q |
148 |
cacagttcaattacaaggtactttaatcatgaccaaaactaacactttcaacttcaacctcacatcttcatgctacacttcaaacatggctgcagccaca |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13898614 |
cacagttcaattacaaggtactttaatcatgaccaaaactaacactttcaacttcaacctcacatcttcatgctacacttcaaacatggctgcagccaca |
13898515 |
T |
|
| Q |
248 |
gaaatcttgttttctcacatcatcttcctcttgaaaaatatccaaatcactgagattattattgcagccattgttttcatattcattcgttctttaagat |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13898514 |
gaaatcttgttttctcacatcatcttcctcttgaaaaatatccaaatcactgagattattattgcagccattgttttcatattcattcgttctttaagat |
13898415 |
T |
|
| Q |
348 |
cgaaaaaacatcgtggcctacccaattggcctattttcggaatgctgccttatttaatcaaaggactcaaaaccaacttgtatgaatggatcactgacat |
447 |
Q |
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| T |
13898414 |
cgaaaaaacatcgtggcctacccaattggcctattttcggaatgctgccttatttaatcaaaggactcaaaaccaacctgtatgaatggatcactgacat |
13898315 |
T |
|
| Q |
448 |
tcttaaacatcataatggaacatgtagattcagagggccatggttcactagcctcaactatgttgtaacctcggaacctcaaaatttagaacatcttctc |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13898314 |
tcttaaacatcataatggaacatgtagattcagagggccatggttcactagcctcaactatgttgtaacctcggaacctcaaaatttagaacatcttctc |
13898215 |
T |
|
| Q |
548 |
aaaacaaagtttagtaatttccctaaaggaaactacttcagagacatagt |
597 |
Q |
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| T |
13898214 |
aaaacaaagtttagtaatttccctaaaggaaactacttcagagacatagt |
13898165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 174 - 598
Target Start/End: Original strand, 13886616 - 13887040
Alignment:
| Q |
174 |
tcatgaccaaaactaacactttcaacttcaacctcacatcttcatgctacacttcaaacatggctgcagccacagaaatcttgttttctcacatcatctt |
273 |
Q |
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||||||||||||||||||||| ||| ||||||||||||| |||||||||||| || ||||||| |||||||||||||| ||||||||||||||| |||| |
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| T |
13886616 |
tcatgaccaaaactaacacttccaatttcaacctcacattttcatgctacacctccaacatggttgcagccacagaaaacttgttttctcacattctctt |
13886715 |
T |
|
| Q |
274 |
cctcttgaaaaatatccaaatcactgagattattattgcagccattgttttcatattcattcgttctttaagatcgaaaaaacatcgtggcctacccaat |
373 |
Q |
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| T |
13886716 |
cctctttcaacaaatccaaatcatagaaattattattgcatccattgtcttcataatcattcatgccttgcactccaagaaacatcatggcctaacaaat |
13886815 |
T |
|
| Q |
374 |
tggcctattttcggaatgctgccttatttaatcaaaggactcaaaaccaacttgtatgaatggatcactgacattcttaaacatcataatggaacatgta |
473 |
Q |
| |
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| T |
13886816 |
tggcctattcttggaatgctaccttccttaatgataggactcaaaaccaacatgtatgaaggcataaccgaaacacttaaacatcaaaatggaaccttta |
13886915 |
T |
|
| Q |
474 |
gattcagagggccatggttcactagcctcaactatgttgtaacctcggaacctcaaaatttagaacatcttctcaaaacaaagtttagtaatttccctaa |
573 |
Q |
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|||||| ||||||||||||||| || |||| | | ||||||| |||||||||||||||||||||||||||||||||||||| | || ||||||||| |
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| T |
13886916 |
gattcaaagggccatggttcacaagtttcaattgcatcataacctcagaacctcaaaatttagaacatcttctcaaaacaaagttcaatattttccctaa |
13887015 |
T |
|
| Q |
574 |
aggaaactacttcagagacatagtt |
598 |
Q |
| |
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|||||||| ||||| ||||| |||| |
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| T |
13887016 |
aggaaacttcttcaaagacacagtt |
13887040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 13898750 - 13898668
Alignment:
| Q |
12 |
catcatcataccacaaattatgtcatcacgtttatatttcctatttcacactgaaaccaatattgtaccaagaattctattct |
94 |
Q |
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| T |
13898750 |
catcatcataccacaaattatgtcatcacgtttatatttcctatttcacactgaaaccaatattgtaccaagaattctattct |
13898668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 222 - 598
Target Start/End: Complemental strand, 1035600 - 1035221
Alignment:
| Q |
222 |
acacttcaaacatggctgcagccacagaaatcttgttttctcacatcatcttcctcttgaaaaatatccaaatcactgagattattattgcagccattgt |
321 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1035600 |
acacttcaaacatggctgcagccacagaaatcttgttttctcacatcatcttggtcttgaaaaatattcaaatcactgagattattattgcagccattgt |
1035501 |
T |
|
| Q |
322 |
tttcatattcattcgttctttaagatcgaaaaaacatcgtgg------cctacccaattggcctattttcggaatgctgccttatttaatcaaaggactc |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1035500 |
tttcatattcattcgttctttaagatcgaaaaaacatcatggtcatggcctaaccaattggcctatttttggaatgctgccttatttaatcaaaggactc |
1035401 |
T |
|
| Q |
416 |
aaaaccaacttgtatgaatggatcactgacattcttaaacatcataatggaacatgtagattcagagggccatggttcactagcctcaactatgttgtaa |
515 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
1035400 |
aaaataaacttgtatgaatggatcactgacattcttaagcatcacaatggaacatctagattcagaggggcatggttcactagcctcaactatgttataa |
1035301 |
T |
|
| Q |
516 |
cctcggaacctcaaaatttagaacatcttctcaaaacaaagtttagtaatttccctaaaggaaactacttcagagacatagtt |
598 |
Q |
| |
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| ||||||| ||||||||||||| |||||||||||||||| | | || |||||||||||||| ||||||||||||||| |
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| T |
1035300 |
---ctgaacctcgaaatttagaacatgttctcaaaacaaagttcactgtttatcctaaaggaaactatttcagagacatagtt |
1035221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 1035858 - 1035796
Alignment:
| Q |
24 |
acaaattatgtcatcacgtttatatttcctatttcacactgaaaccaatattgtaccaagaat |
86 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1035858 |
acaaattatgtcatcacgtttatatttcctatttcaaactgaaaccaatattgtaccaagaat |
1035796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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