View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14812_low_5 (Length: 426)
Name: NF14812_low_5
Description: NF14812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14812_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 12013800 - 12013410
Alignment:
| Q |
17 |
cacagacacaacactgagacaccaaatacacctttaatctgaagtgtcagttattgctacttagaaaaagctacatgctagaatctcatcagaactaagg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12013800 |
cacagacacaacactgagacaccaaatacacctttaa-----agtgtcagttattgctacttagaaaaagctacatgctagaatctcatgagaactaagg |
12013706 |
T |
|
| Q |
117 |
acatgtttgatttgatgatacaaaatggaatcagttaagaggaaaacctctttatcaacagggtgacgaaaatcatcagcatcaaggtcacgaaagacta |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12013705 |
acatgtttggattgatgatacaaaatggaatcagttaagaggaaaacctctttatcaacagggtgacgaaaatcatcagcatcaaggtcacgaaagacta |
12013606 |
T |
|
| Q |
217 |
aa------gcagcnnnnnnnnnnnnnnnnncagcagctctagaaacagttaatccagctggtttgtgattgttgtgaacccgaatgaaccggatctttga |
310 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12013605 |
aagcagcagcagaagaagaagaagatgaagcagcagctctagaaacagttaatccagctggtttgtgattgttgtgaacccgaatgaaccggatctttga |
12013506 |
T |
|
| Q |
311 |
actggcaccgaaccgggctctatccgaaggcgaagcaacgaaagcgagtggctgagaaaagaaagaaacggaagccatggagatggaattgtaaga |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12013505 |
actggcaccgaaccgggctctatccgaaggcgaagcaacgaaagcgagtggctgagaaaagaaagaaacggaagccatggagatggaattgtaaga |
12013410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 4216054 - 4216022
Alignment:
| Q |
35 |
acaccaaatacacctttaatctgaagtgtcagt |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4216054 |
acaccaaatacacctttaatctgaagtgtcagt |
4216022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University