View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14812_low_6 (Length: 388)

Name: NF14812_low_6
Description: NF14812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14812_low_6
NF14812_low_6
[»] chr5 (2 HSPs)
chr5 (1-353)||(35314732-35315098)
chr5 (53-102)||(20054217-20054266)
[»] chr6 (4 HSPs)
chr6 (52-102)||(22869950-22870000)
chr6 (61-102)||(20544850-20544891)
chr6 (61-102)||(25078416-25078457)
chr6 (61-100)||(28078049-28078089)
[»] chr8 (2 HSPs)
chr8 (61-102)||(31035561-31035602)
chr8 (59-101)||(31566411-31566453)
[»] chr7 (2 HSPs)
chr7 (61-102)||(6049269-6049310)
chr7 (61-100)||(11081907-11081946)
[»] chr1 (6 HSPs)
chr1 (61-102)||(28279654-28279695)
chr1 (59-102)||(13426797-13426840)
chr1 (61-103)||(30738478-30738520)
chr1 (61-102)||(10116158-10116199)
chr1 (61-102)||(14183455-14183496)
chr1 (62-102)||(26613094-26613134)
[»] chr2 (5 HSPs)
chr2 (62-102)||(34574990-34575030)
chr2 (53-100)||(15697398-15697445)
chr2 (61-103)||(17897098-17897140)
chr2 (61-102)||(13828177-13828218)
chr2 (62-102)||(41304359-41304399)
[»] chr3 (2 HSPs)
chr3 (52-103)||(31021011-31021062)
chr3 (61-102)||(14634291-14634332)
[»] chr4 (5 HSPs)
chr4 (61-102)||(9864154-9864196)
chr4 (61-102)||(8756103-8756144)
chr4 (61-102)||(52043412-52043453)
chr4 (63-99)||(3982032-3982068)
chr4 (61-97)||(29609351-29609387)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 35314732 - 35315098
Alignment:
Q  1 ctagggtttatagtggtttctcttggcaacaaaaattaggattgagatatatctctacagatcaagtattttattgatgtgatttttaaggaattcacaa 100  Q
    |||| |||||||| ||||||||||||||||||| | |||| |||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||    
T  35314732 ctagagtttataggggtttctcttggcaacaaacactagggttgagatatatctctacacatcaagtattttatttatgtgatttttaacgaattcacaa 35314831  T
Q  101 catcaacaaaatcgttgaatataatatggttnnnnnnnnn-tacagatcttaatagtacgattaagcatgtttcaa-------------atttgnnnnnn 186  Q
    |||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||             |||||          
T  35314832 catcaacaaaatcgttgaatataatatggttaaaaaaaaaatacagatcttaatagtacgattaagcatgtttcaatatattgtttcaaatttgtttttt 35314931  T
Q  187 naaagttgtgtcgaggaaaatttgaattcactcatgaccttagttgtctcttaaattctcaccactattaaggtcaattattttggaactctaattgatt 286  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35314932 taaagttgtgtcgaggaaaatttgaattcactcatgaccttagttgtctcttaaattctcgccactattaaggtcaattattttggaactctaattgatt 35315031  T
Q  287 tctcaacaagttgaaacacaaatcgtccgattaaaattgaatgactaagattatgattgaaagcatg 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35315032 tctcaacaagttgaaacacaaatcgtccgattaaaattgaatgactaagattatgattgaaagcatg 35315098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 20054217 - 20054266
Alignment:
Q  53 ctctacagatcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    ||||||| |||||||||||||||  |||||||||||  ||||||||||||    
T  20054217 ctctacacatcaagtattttattagtgtgatttttatcgaattcacaaca 20054266  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 22870000 - 22869950
Alignment:
Q  52 tctctacagatcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    |||| ||| |||||||||||||||| |||||||||||| ||||||||||||    
T  22870000 tctcaacacatcaagtattttattggtgtgatttttaacgaattcacaaca 22869950  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 20544850 - 20544891
Alignment:
Q  61 atcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  20544850 atcaagtattttattgatgtgatttttaacgaattaacaaca 20544891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 25078457 - 25078416
Alignment:
Q  61 atcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    ||||||||||||| || |||||||||||| ||||||||||||    
T  25078457 atcaagtattttactggtgtgatttttaacgaattcacaaca 25078416  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 28078089 - 28078049
Alignment:
Q  61 atcaagtattttattgatgtga-tttttaaggaattcacaa 100  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  28078089 atcaagtattttattggtgtgattttttaaggaattcacaa 28078049  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 31035561 - 31035602
Alignment:
Q  61 atcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  31035561 atcaagtattttattggtgtgatttttaacgaattcacaaca 31035602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 31566453 - 31566411
Alignment:
Q  59 agatcaagtattttattgatgtgatttttaaggaattcacaac 101  Q
    |||||||||||||||||| ||||||||||||  ||||||||||    
T  31566453 agatcaagtattttattggtgtgatttttaacaaattcacaac 31566411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 6049269 - 6049310
Alignment:
Q  61 atcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  6049269 atcaagtattttattggtgtgatttttaacgaattcacaaca 6049310  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 11081907 - 11081946
Alignment:
Q  61 atcaagtattttattgatgtgatttttaaggaattcacaa 100  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  11081907 atcaagtattttattgatgtgatttttaacgaatacacaa 11081946  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 28279654 - 28279695
Alignment:
Q  61 atcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  28279654 atcaagtattttattggtgtgatttttaacgaattcacaaca 28279695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 13426840 - 13426797
Alignment:
Q  59 agatcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    |||||||||||||||||| ||||||||| || ||||||||||||    
T  13426840 agatcaagtattttattggtgtgattttcaacgaattcacaaca 13426797  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 30738520 - 30738478
Alignment:
Q  61 atcaagtattttattgatgtgatttttaaggaattcacaacat 103  Q
    ||||| ||||||||| ||||||||||||| |||||||||||||    
T  30738520 atcaaatattttattaatgtgatttttaacgaattcacaacat 30738478  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 10116158 - 10116199
Alignment:
Q  61 atcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    |||||||||||||||| |||||||||||| ||||||| ||||    
T  10116158 atcaagtattttattggtgtgatttttaacgaattcaaaaca 10116199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 14183496 - 14183455
Alignment:
Q  61 atcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    |||||||||||||||| |||||||||||  ||||||||||||    
T  14183496 atcaagtattttattggtgtgatttttatcgaattcacaaca 14183455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 26613134 - 26613094
Alignment:
Q  62 tcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    |||||||||| |||| |||||||||||| ||||||||||||    
T  26613134 tcaagtatttcattggtgtgatttttaacgaattcacaaca 26613094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 34575030 - 34574990
Alignment:
Q  62 tcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    ||||||||||||||| |||||||||||| ||||||||||||    
T  34575030 tcaagtattttattggtgtgatttttaacgaattcacaaca 34574990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 15697398 - 15697445
Alignment:
Q  53 ctctacagatcaagtattttattgatgtgatttttaaggaattcacaa 100  Q
    ||||||| |||||||||||||||| ||||||||||||  |||||||||    
T  15697398 ctctacacatcaagtattttattggtgtgatttttaacaaattcacaa 15697445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 17897140 - 17897098
Alignment:
Q  61 atcaagtattttattgatgtgatttttaaggaattcacaacat 103  Q
    ||||||||||||||||||||  ||||||| |||||||||||||    
T  17897140 atcaagtattttattgatgtattttttaacgaattcacaacat 17897098  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 13828218 - 13828177
Alignment:
Q  61 atcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    ||||| |||||||||| |||||||||||| ||||||||||||    
T  13828218 atcaaatattttattggtgtgatttttaacgaattcacaaca 13828177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 41304399 - 41304359
Alignment:
Q  62 tcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    ||||||||||||||| ||||| |||||| ||||||||||||    
T  41304399 tcaagtattttattggtgtgacttttaacgaattcacaaca 41304359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 31021062 - 31021011
Alignment:
Q  52 tctctacagatcaagtattttattgatgtgatttttaaggaattcacaacat 103  Q
    |||| ||| |||||||||||||||| |||||||||| | |||||||||||||    
T  31021062 tctccacacatcaagtattttattggtgtgatttttgacgaattcacaacat 31021011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 14634332 - 14634291
Alignment:
Q  61 atcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    |||||||||||||||| ||||||||| || ||||||||||||    
T  14634332 atcaagtattttattggtgtgattttcaacgaattcacaaca 14634291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 9864154 - 9864196
Alignment:
Q  61 atcaagtattttattgatgtgattttt-aaggaattcacaaca 102  Q
    ||||||||||||||||||||||||||| || ||||||||||||    
T  9864154 atcaagtattttattgatgtgatttttcaacgaattcacaaca 9864196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 8756144 - 8756103
Alignment:
Q  61 atcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    |||||||||||||||||||||||||| |  ||||||||||||    
T  8756144 atcaagtattttattgatgtgattttcatcgaattcacaaca 8756103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 52043453 - 52043412
Alignment:
Q  61 atcaagtattttattgatgtgatttttaaggaattcacaaca 102  Q
    |||||||||||||||| ||||||||||||  |||||||||||    
T  52043453 atcaagtattttattggtgtgatttttaacaaattcacaaca 52043412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 3982068 - 3982032
Alignment:
Q  63 caagtattttattgatgtgatttttaaggaattcaca 99  Q
    |||||||||||||| |||||||||||| |||||||||    
T  3982068 caagtattttattggtgtgatttttaatgaattcaca 3982032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 29609387 - 29609351
Alignment:
Q  61 atcaagtattttattgatgtgatttttaaggaattca 97  Q
    |||||||||||||||| |||||||||||| |||||||    
T  29609387 atcaagtattttattggtgtgatttttaatgaattca 29609351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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