View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14812_low_7 (Length: 384)
Name: NF14812_low_7
Description: NF14812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14812_low_7 |
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| [»] scaffold0223 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 3295400 - 3295141
Alignment:
| Q |
17 |
acccattatggatacccagaatttacataactctctatctagtaatggaaatgttaaaacacggtacttaagcaagctttatcagtagcaaaaatgttaa |
116 |
Q |
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| T |
3295400 |
acccattatggatacccaaaatttacataactct--atctagtaatggaaatgttaaa-cacagtacttaagcaagctttatcagtagcaaaaatgttaa |
3295304 |
T |
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| Q |
117 |
acaagagtttttgctaacaaagttaagcagggtaaaaaatcattttgatcttgaatgtgagaagctgtcacactatagtttctgattgtatgtaaatttt |
216 |
Q |
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| T |
3295303 |
-caagagtttttgctaacaaagttaagcagggtaaacaatcattttgatcttgaatgtgagaagctgtcacactatag-ttctgattgtatgtaaatttt |
3295206 |
T |
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| Q |
217 |
caaacacattctcaagtctcttttttgttagtaattttatggactaaattaataaataacacattata |
284 |
Q |
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| T |
3295205 |
caaacatattctcaagtc---tttttgttagtaattttatggactaaattaataaataacacattata |
3295141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 3294977 - 3294878
Alignment:
| Q |
280 |
ttatataagtgagttttcaatggcatagccatttcatctagctacc--nnnnnnntgtattttgtaattgtgatagattcaaaaactatatgtactacct |
377 |
Q |
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| T |
3294977 |
ttatataagtgagttttcaatggcatagccatttcatctagctaccaaaaaaaaatgtattttgtaattgtgatagattcaaaaactatatgtactacct |
3294878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 26212324 - 26212363
Alignment:
| Q |
217 |
caaacacattctcaagtctcttttttgttagtaattttat |
256 |
Q |
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| T |
26212324 |
caaacacattctcaagtatcttttttgttagtaattttat |
26212363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 32272050 - 32272102
Alignment:
| Q |
214 |
tttcaaacacattctcaagtctcttttttgttagtaattttatggactaaatt |
266 |
Q |
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| T |
32272050 |
tttcaaacacatgctcaggtgtctcttttgttagtaattttatggactaaatt |
32272102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 21093233 - 21093266
Alignment:
| Q |
235 |
tcttttttgttagtaattttatggactaaattaa |
268 |
Q |
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| T |
21093233 |
tcttttttgttagtaattttatggagtaaattaa |
21093266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 10247 - 10211
Alignment:
| Q |
229 |
caagtctcttttttgttagtaattttatggactaaat |
265 |
Q |
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| T |
10247 |
caagtgtctcttttgttagtaattttatggactaaat |
10211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 10443 - 10407
Alignment:
| Q |
229 |
caagtctcttttttgttagtaattttatggactaaat |
265 |
Q |
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| T |
10443 |
caagtgtctcttttgttagtaattttatggactaaat |
10407 |
T |
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