View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14812_low_8 (Length: 372)
Name: NF14812_low_8
Description: NF14812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14812_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 39643417 - 39643778
Alignment:
| Q |
1 |
gatccaagagaatctccggcgatgttgaagtagtattagtttggttaaacaagattagagtaataattaattacttgaagattaagcatcatgttagatc |
100 |
Q |
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| T |
39643417 |
gatcgaagagaatctccggcgatgttgaagtagtattagtttggttaaacaagattagagtaataattaattacttgaagattaagcatcatgttagatc |
39643516 |
T |
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| Q |
101 |
ttaatctgaatgaagattatgaagactcgatcatgctggtggaaaaacttccagaagcttcatcaggaacttcgaattcatccatagtgaatgcagaggc |
200 |
Q |
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| T |
39643517 |
ttaatctgaatgaagattacgaagactcgatcatgctggtggaaaaacttccagaagcttcatcaggaacttcgaattcatccatagtgaatgcagaggc |
39643616 |
T |
|
| Q |
201 |
ttcaagtaacatcaccggtgatgaagactcgtgttcaacacgcgctggtggtgttttcactttcaacttcggtatcctgaaggtggaaggagggaacgat |
300 |
Q |
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| T |
39643617 |
ttcaagtaacatcaccggtgatgaagactcgtgttcaacacgcgctggtggtgttttcactttcaacttcggtatcctgaaggtggaaggagggaacgat |
39643716 |
T |
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| Q |
301 |
gatgttgttgttccgacaaaggagttttttccggtgactgccggaacttcaacgatgatgat |
362 |
Q |
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| T |
39643717 |
gatgttgttgttccgacaaaggagttttttccggtgagtgccggaacttcaacgatgatgat |
39643778 |
T |
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