View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14813_high_14 (Length: 328)

Name: NF14813_high_14
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14813_high_14
NF14813_high_14
[»] chr8 (2 HSPs)
chr8 (25-321)||(10386779-10387073)
chr8 (193-241)||(10172476-10172524)
[»] chr4 (4 HSPs)
chr4 (164-250)||(30546441-30546533)
chr4 (163-272)||(37538109-37538226)
chr4 (194-233)||(45994745-45994784)
chr4 (193-241)||(31053047-31053095)
[»] chr7 (2 HSPs)
chr7 (193-241)||(30017481-30017529)
chr7 (193-234)||(18358801-18358842)
[»] chr2 (3 HSPs)
chr2 (193-223)||(11610772-11610802)
chr2 (193-241)||(1465744-1465792)
chr2 (227-272)||(32402222-32402269)
[»] chr3 (1 HSPs)
chr3 (120-181)||(2973050-2973111)
[»] chr1 (2 HSPs)
chr1 (193-250)||(40614061-40614118)
chr1 (193-241)||(51587381-51587429)
[»] chr6 (1 HSPs)
chr6 (193-233)||(6453035-6453075)
[»] chr5 (1 HSPs)
chr5 (193-241)||(14717343-14717391)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 25 - 321
Target Start/End: Complemental strand, 10387073 - 10386779
Alignment:
Q  25 cacttccctttctaaaagtactttgcttccctctagtctaatataatcaaatttgaaattatgatttaaaattgcttactaccatttaaagattcattgt 124  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10387073 cacttccctttctaa--gtactttgcttccctctattctaatataatcaaatttgaaattatgatttaaaattgtttactaccatttaaagattcattgt 10386976  T
Q  125 aaaattatattacatgtgcattcaatgatatatattcccatcaatcaatgaatatgaaaacacatgagtattcattaattaacgtgacaacacatcgttt 224  Q
    |||||||| ||||||||||||| ||||||||||  |||  |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||     
T  10386975 aaaattattttacatgtgcatttaatgatatattgtcctgtcaatcaatgaatatgaaaacatatgagtgttcattaattaacgtgacaacacatcgttg 10386876  T
Q  225 gatgcatgtgtgaaatacatttacactgtcggtatagtaattaaactcaacataatatattaaatacacactataattcatatagtattatctaccc 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  10386875 gatgcatgtgtgaaatacatttacactgtcggtatagtaattaaactcaacataatatattaaatacacactataattcatatagttttatataccc 10386779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 10172476 - 10172524
Alignment:
Q  193 tattcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaata 241  Q
    |||||| ||||| |||||||||| |||| |||||||||||||| |||||    
T  10172476 tattcactaattgacgtgacaacgcatcatttgatgcatgtgtaaaata 10172524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 30546441 - 30546533
Alignment:
Q  164 atcaatcaatgaatatgaaaacacatgagt------attcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaatacatttacac 250  Q
    |||||| |||||||||||||| ||||||||      ||||| ||||||||||||||||| |||||| ||||||||||| ||||| || |||||    
T  30546441 atcaattaatgaatatgaaaatacatgagttgtcttattcactaattaacgtgacaacatatcgttggatgcatgtgtaaaataaatgtacac 30546533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 37538109 - 37538226
Alignment:
Q  163 catcaatcaatgaatatgaaaacacatgagt------attcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaatacatttacactgtc-- 254  Q
    ||||||| |||||||||||||||| ||||||      ||||||||||| | ||  ||||||||||||  ||||||||||||||||  |||||||||||      
T  37538109 catcaattaatgaatatgaaaacatatgagttgtcgcattcattaattgatgtcgcaacacatcgttgaatgcatgtgtgaaataactttacactgtcag 37538208  T
Q  255 ggtatagtaattaaactc 272  Q
     |||||| ||||||||||    
T  37538209 tgtatagcaattaaactc 37538226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 45994784 - 45994745
Alignment:
Q  194 attcattaattaacgtgacaacacatcgtttgatgcatgt 233  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  45994784 attcattaattcacgtgacaacacatcgtttgatgcatgt 45994745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 31053047 - 31053095
Alignment:
Q  193 tattcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaata 241  Q
    |||||||||||| ||| ||||||||||| || ||||||||||| |||||    
T  31053047 tattcattaattgacgcgacaacacatcattggatgcatgtgtaaaata 31053095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 30017481 - 30017529
Alignment:
Q  193 tattcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaata 241  Q
    |||||||||||| |||||||||| ||||||| ||||||||||| |||||    
T  30017481 tattcattaattgacgtgacaacgcatcgttggatgcatgtgtaaaata 30017529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 18358842 - 18358801
Alignment:
Q  193 tattcattaattaacgtgacaacacatcgtttgatgcatgtg 234  Q
    |||||||||||| || |||||||||||| |||||||||||||    
T  18358842 tattcattaattgacatgacaacacatcatttgatgcatgtg 18358801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 11610802 - 11610772
Alignment:
Q  193 tattcattaattaacgtgacaacacatcgtt 223  Q
    |||||||||||||||||||||||||||||||    
T  11610802 tattcattaattaacgtgacaacacatcgtt 11610772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 1465792 - 1465744
Alignment:
Q  193 tattcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaata 241  Q
    |||| ||||||| ||||||||||||||| || ||||||||||| |||||    
T  1465792 tatttattaattgacgtgacaacacatcattggatgcatgtgtaaaata 1465744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 32402269 - 32402222
Alignment:
Q  227 tgcatgtgtgaaatacatttacactgtcg--gtatagtaattaaactc 272  Q
    ||||||||| ||||| |||||||||||||  |||||||||||||||||    
T  32402269 tgcatgtgtaaaataaatttacactgtcggtgtatagtaattaaactc 32402222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 2973050 - 2973111
Alignment:
Q  120 attgtaaaattatattacatgtgcattcaatgatatatattcccatcaatcaatgaatatga 181  Q
    ||||||||||||| |||||| |||||| ||| |||| | ||| | |||||||||||||||||    
T  2973050 attgtaaaattattttacatttgcatttaataatatgttttcacgtcaatcaatgaatatga 2973111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 40614118 - 40614061
Alignment:
Q  193 tattcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaatacatttacac 250  Q
    |||| ||||||||||||||||||| |||  |||||| |||| | ||||||||||||||    
T  40614118 tatttattaattaacgtgacaacatatcacttgatgtatgtttaaaatacatttacac 40614061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 51587429 - 51587381
Alignment:
Q  193 tattcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaata 241  Q
    |||||||||||| ||||  |||||||| ||||||||||||||| |||||    
T  51587429 tattcattaattgacgtagcaacacattgtttgatgcatgtgtaaaata 51587381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 6453035 - 6453075
Alignment:
Q  193 tattcattaattaacgtgacaacacatcgtttgatgcatgt 233  Q
    |||||||||||| ||||||||||||||| || |||||||||    
T  6453035 tattcattaattgacgtgacaacacatcattagatgcatgt 6453075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 14717343 - 14717391
Alignment:
Q  193 tattcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaata 241  Q
    |||||||||||| | ||||||||||||| || ||||||||||| |||||    
T  14717343 tattcattaattgatgtgacaacacatcattagatgcatgtgtaaaata 14717391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University