View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14813_high_23 (Length: 242)
Name: NF14813_high_23
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14813_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 16223227 - 16223025
Alignment:
| Q |
22 |
acacctatcattacaacaatcattatcacattcatcgctgcagagtcccatccctttatcacacttatcatatggtggtactcctggtgctggatgttcg |
121 |
Q |
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| T |
16223227 |
acacctatcattacaacaatcattatcacattcatcgctgcagagtcccatccctttatcacacttatcatatggtggtactcctggtgctggatgttcg |
16223128 |
T |
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| Q |
122 |
aaagtacaagtgcataggttatagaaatcacaattatattctaaaagtttagcacctcttccaaagtcttgacacacccgtttacaacgtacctctttat |
221 |
Q |
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| T |
16223127 |
aaagtacaagtgcataggttatagaagtcacaattatattctaaaagtttagcacctcttccaaagtcttgacacacccgtttacaatgtacctctttat |
16223028 |
T |
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| Q |
222 |
cag |
224 |
Q |
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||| |
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| T |
16223027 |
cag |
16223025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 16207275 - 16207220
Alignment:
| Q |
168 |
gtttagcacctcttccaaagtcttgacacacccgtttacaacgtacctctttatca |
223 |
Q |
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| T |
16207275 |
gtttagcaccttttccaaagtcttgacacacctgtggacaatgtacctctttatca |
16207220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 16181029 - 16180953
Alignment:
| Q |
111 |
ctggatgttcgaaagtacaagtgcataggttatagaaatcacaattatattctaaaagtttagcacctcttccaaag |
187 |
Q |
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| T |
16181029 |
ctggatgttcgtaagtacatgtgcataagttgtagaagtcacaactccatcctataggtttaacacctcttccaaag |
16180953 |
T |
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