View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14813_high_25 (Length: 237)
Name: NF14813_high_25
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14813_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 9418773 - 9418552
Alignment:
| Q |
1 |
tggccatgggtgttggggattctgagagggtttctagggaaacagatgatgttgatgacagtgaaaacatgaatccaatgaccattgaggaactagatgt |
100 |
Q |
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| T |
9418773 |
tggccatgggtgttggggattctgagagggtttttagggaaacaaatgatgttgatgacagtgaaaacatgaatccaatgaccattgaggaactagatgt |
9418674 |
T |
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| Q |
101 |
tgaaggtgattatgttattcaacatgatgaagttcaaagagctgaggtgacaaacaacaatgacaatactattcttgaacttaagagattggttcaaacc |
200 |
Q |
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| T |
9418673 |
tgaaggtgattatgttattcaacatgatgaagttcaaagagttgaggtgagaaacaacaatgacaatactattcttgaacttaagagattggttcaaacc |
9418574 |
T |
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| Q |
201 |
atggcatcttctgttgctactg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
9418573 |
atggcatcttctgttgctactg |
9418552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12001332 - 12001553
Alignment:
| Q |
1 |
tggccatgggtgttggggattctgagagggtttctagggaaacagatgatgttgatgacagtgaaaacatgaatccaatgaccattgaggaactagatgt |
100 |
Q |
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| T |
12001332 |
tggccatggatgttggggattctgagagggtttatatggaaacaaatgatgttgatgacagtgaaaacatgaatccaatgaccattgaggaactagatgt |
12001431 |
T |
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| Q |
101 |
tgaaggtgattatgttattcaacatgatgaagttcaaagagctgaggtgacaaacaacaatgacaatactattcttgaacttaagagattggttcaaacc |
200 |
Q |
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| T |
12001432 |
tgatggtgattatgttattcaacatgatgaagttgaaagagctgaggtgacaaacaacaatgacaatacgattcttgaacttaagagattggttcaaacc |
12001531 |
T |
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| Q |
201 |
atggcatcttctgttgctactg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
12001532 |
atggcatcttctgttgctactg |
12001553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 17814463 - 17814333
Alignment:
| Q |
1 |
tggccatgggtgttggggattctgagagggtttctagggaaacagatgatgttgatgacagtgaaaacatgaatccaatgaccattgaggaactagatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
17814463 |
tggccatgggtgttggggattctgagagggtttctaaggaaacaaatggtgttgatgttagtgaaaacatgaatccaatgaccattgatgaactagatgt |
17814364 |
T |
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| Q |
101 |
tgaaggtgattatgttattcaacatgatgaa |
131 |
Q |
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||||| ||||||||||||||||||||||||| |
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| T |
17814363 |
tgaagatgattatgttattcaacatgatgaa |
17814333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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