View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14813_high_26 (Length: 229)
Name: NF14813_high_26
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14813_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 7754662 - 7754466
Alignment:
| Q |
17 |
tgcaaagggtattccattggctttaggagtaataggatccaacttgaaaggtaaaagcattgaagaatgggatattgaacttcagaaatatagaaaggtc |
116 |
Q |
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| T |
7754662 |
tgcaaagggtattccattggctttaagagtaataggatccaacttgaaaggtaaaagcattgaagaatgggatattgaacttcagaaatatagaaaggtc |
7754563 |
T |
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| Q |
117 |
ccagatgctgagattcaaggtgtaatggaaatcagctacaaaggcctatctgacttggaccagaaaatttttctagacatcgcgtgtttcttcaaag |
213 |
Q |
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| T |
7754562 |
ccagatgctgagattcaaggtgtaatggaaatcagctacaaaggcctatctgacttggaccagaaaatttttctagacatcgcgtgtttcttcaaag |
7754466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 7838178 - 7837982
Alignment:
| Q |
17 |
tgcaaagggtattccattggctttaggagtaataggatccaacttgaaaggtaaaagcattgaagaatgggatattgaacttcagaaatatagaaaggtc |
116 |
Q |
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| T |
7838178 |
tgcacagggtattccattggttttaacagtcataggatccaatttgaaaggtaagagcatacatgaatggcatattgaactgcagaaatatagaaaggtt |
7838079 |
T |
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| Q |
117 |
ccagatgctgagattcaaggtgtaatggaaatcagctacaaaggcctatctgacttggaccagaaaatttttctagacatcgcgtgtttcttcaaag |
213 |
Q |
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| T |
7838078 |
ccagatgctgagattcaaagtgtactggaaatcagctacaaaggcctatctgacttggaccagaaagtttttctggacattgcttgttttttcaaag |
7837982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 7761761 - 7761565
Alignment:
| Q |
17 |
tgcaaagggtattccattggctttaggagtaataggatccaacttgaaaggtaaaagcattgaagaatgggatattgaacttcagaaatatagaaaggtc |
116 |
Q |
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|||||| |||||||||||||||||| || |||||||||||| ||||||||||| ||||| || ||||||||||||||| | |||| |||||||||||| |
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| T |
7761761 |
tgcaaaaggtattccattggctttaaaagcaataggatccaatttgaaaggtaagagcatagaggaatgggatattgaattgcagagatatagaaaggtt |
7761662 |
T |
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| Q |
117 |
ccagatgctgagattcaaggtgtaatggaaatcagctacaaaggcctatctgacttggaccagaaaatttttctagacatcgcgtgtttcttcaaag |
213 |
Q |
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| T |
7761661 |
ccagatgctgagattcagggtgtattggaaatcagctacaatggcctatctgacttggaacaaaaagcttttctggacattgcttgttttttcaaag |
7761565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 7828208 - 7828332
Alignment:
| Q |
30 |
ccattggctttaggagtaataggatccaacttgaaaggtaaaagcattgaagaatgggatattgaacttcag-aaatatagaaaggtcccagatgctgag |
128 |
Q |
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| T |
7828208 |
ccattagctttatgtgtaataggttccaatttgaagggtaaaagcatagaagaatggga-attg-acttgggaaaatataggaaggttccacatgctgat |
7828305 |
T |
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| Q |
129 |
attcaaggtgtaatggaaatcagctac |
155 |
Q |
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| T |
7828306 |
attcaaggtgtacttgaaataagctac |
7828332 |
T |
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