View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14813_high_4 (Length: 663)
Name: NF14813_high_4
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14813_high_4 |
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| [»] scaffold0392 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 49456295 - 49456723
Alignment:
| Q |
1 |
ggtaaaattctgaatagatggtgaatcctatccctgtaaataacatcggtaatcaatcattcatttccctgtagcttccatgataacaaggaacccggat |
100 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49456295 |
ggtaaaattctgaatagatcgtgaaccctatccctgtaaataacatcggtaatc----attcatttccctgtagcttccatgataacaaggaacccggat |
49456390 |
T |
|
| Q |
101 |
ttcttgttgtcactgactacccgaaatcgtaagtcaagagatccgtgatcgtctgatcgagatcgaaagtccagatctaaagcagattttgatttccttc |
200 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49456391 |
ttcttgttgtcactgactacacgaaatcgtaggtcaagagatccatgatcgtctgatcgagatcgaaagtccagatctaaagcagattttgatttccttc |
49456490 |
T |
|
| Q |
201 |
aaaaactaaaactaccaagcttaagatcgggaccatccgatctcaatcagatcagacatcaggcggtcacggatcccctgactgcgtgattgcatgcagt |
300 |
Q |
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| T |
49456491 |
aaaaactaaaactaccaagcttaagatcgggaccatccgatctcaatcagatcagacatcaggcggtcacggatcccctgactgcatgattgcatgcagt |
49456590 |
T |
|
| Q |
301 |
caggcagtccagttcgacaagcagacgttcagagattaaacaagtcttgagtttataaactagctaatatcatcaacacagagctcattgccgtcactag |
400 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49456591 |
caggcagtccagttcgacaaccagacgttcagagattaaacaagtcttgagtttatacactagctaatatcatcaacacagagctcattgccgtcgctag |
49456690 |
T |
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| Q |
401 |
ttgtctgccagagaaacactttgccaccaaaac |
433 |
Q |
| |
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| T |
49456691 |
ttgtctgccagagaaacactttgccaccaaaac |
49456723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 482 - 663
Target Start/End: Original strand, 49456768 - 49456949
Alignment:
| Q |
482 |
tataatattctaaaaaagaatatgagactactacacaatcattatcaagtaccaatgcaacactataaactaacctgatgatagccaggggccaagttat |
581 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49456768 |
tataatattctaaaaaagaatatgagactactacacaatcattatcaagtaccaaggcaacactataaactaacctgatgatagccaggggccaagttat |
49456867 |
T |
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| Q |
582 |
gaataacttgaaacacagttggacaaccttcaactggtgacatttgcagaagctcaggccacctttgagacaaaatttaaat |
663 |
Q |
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| T |
49456868 |
gaataacttgaaacacagttggacaaccttcaactggtgacatttgcagaagctcagaccacctttgagacaaaatttaaat |
49456949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0392 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 546 - 647
Target Start/End: Complemental strand, 2331 - 2230
Alignment:
| Q |
546 |
ataaactaacctgatgatagccaggggccaagttatgaataacttgaaacacagttggacaaccttcaactggtgacatttgcagaagctcaggccacct |
645 |
Q |
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||||||| |||||||| || ||||||| ||| | | ||||||||||||||| ||||| |||||||| || || |||||| ||| |||||||| |||||| |
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| T |
2331 |
ataaactgacctgatggtaaccagggggcaatctgtaaataacttgaaacactgttgggcaaccttccaccggagacattggcaaaagctcagaccacct |
2232 |
T |
|
| Q |
646 |
tt |
647 |
Q |
| |
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|| |
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|
| T |
2231 |
tt |
2230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 31465183 - 31465240
Alignment:
| Q |
186 |
attttgatttccttcaaaaactaaaactaccaagcttaagatcgggaccatccgatct |
243 |
Q |
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||||| |||| ||||||||||||||| ||||||| |||||||| ||||| || ||||| |
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| T |
31465183 |
attttaattttcttcaaaaactaaaattaccaagtttaagatctggaccgtctgatct |
31465240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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