View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14813_low_1 (Length: 768)
Name: NF14813_low_1
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14813_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 20 - 559
Target Start/End: Original strand, 10319957 - 10320512
Alignment:
| Q |
20 |
gcaacaatgtgagccggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10319957 |
gcaacaatgtgagccggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtc |
10320056 |
T |
|
| Q |
120 |
ctacagaggctcatctgacacgcctgtacaatcggattttgcacgatctggattaaccacttcaaggctggattcaatgaggcatcggagtctgaaggat |
219 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10320057 |
ctacacaggctcatctgacaggcctgtacaatcagattttgcacaatttggattaaccacttcaaggctggattcaatgaggcatcggagtctgaaggat |
10320156 |
T |
|
| Q |
220 |
attatccagtttgaatcaggttcatcacatgcatctagctctcagggccctcgga---------------accctcaaacccttgagggcgagagttctc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10320157 |
attatccagtttgaatcaggttcatcacatgcatctagctctcagggccctcggactcctctggctctgaaccctcaaacccttgagggcgagagttctc |
10320256 |
T |
|
| Q |
305 |
gggctcagagcaatcggtagaatctcaaacagtggtttttcctcagttttacgtatcatgaaattttaataagtgttctggagtttgtgacacaaaggat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10320257 |
gggctcagagcaatcggtagaatctcaaacagtggtttttcctcagttttacgtatcatgaaattttaataagtgttctggagtttgtgacacaaaggat |
10320356 |
T |
|
| Q |
405 |
tatgtctgatatgtagcaaacaaacttgtatggttctgctttgttttggaaatgaaagttcaaaagtattctgaaatgatgtatagtgtttttacattac |
504 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
10320357 |
tatgtctgatatgtagcaaaaaaacttgtatggttctgctttgttttggaaatgaaagttcaaaagtattctgaaatgttgcatagtgtttttacattac |
10320456 |
T |
|
| Q |
505 |
tgtaaatt-aatttcatggtttcgttcactcttaattaatttgattcaacatttga |
559 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10320457 |
tgtaaattaaatttcatggtttcgttcactcttaattaatttgattcaacatttga |
10320512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 20 - 559
Target Start/End: Original strand, 10337073 - 10337628
Alignment:
| Q |
20 |
gcaacaatgtgagccggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10337073 |
gcaacaatgtgagccggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtc |
10337172 |
T |
|
| Q |
120 |
ctacagaggctcatctgacacgcctgtacaatcggattttgcacgatctggattaaccacttcaaggctggattcaatgaggcatcggagtctgaaggat |
219 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10337173 |
ctacacaggctcatctgacaggcctgtacaatcagattttgcacaatttggattaaccacttcaaggctggattcaatgaggcatcggagtctgaaggat |
10337272 |
T |
|
| Q |
220 |
attatccagtttgaatcaggttcatcacatgcatctagctctcagggccctcgga---------------accctcaaacccttgagggcgagagttctc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10337273 |
attatccagtttgaatcaggttcatcacatgcatctagctctcaaggccctcggactcctctggctctgaaccctcaaacccttgagggcgagagttctc |
10337372 |
T |
|
| Q |
305 |
gggctcagagcaatcggtagaatctcaaacagtggtttttcctcagttttacgtatcatgaaattttaataagtgttctggagtttgtgacacaaaggat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10337373 |
gggctcagagcaatcggtagaatctcaaacagtggtttttcctcagttttacgtatcatgaaattttaataagtgttctggagtttgtgacacaaaggat |
10337472 |
T |
|
| Q |
405 |
tatgtctgatatgtagcaaacaaacttgtatggttctgctttgttttggaaatgaaagttcaaaagtattctgaaatgatgtatagtgtttttacattac |
504 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
10337473 |
tatgtctgatatgtagcaaaaaaacttgtatggttctgctttgttttggaaatgaaagttcaaaagtattctgaaatgttgcatagtgtttttacattac |
10337572 |
T |
|
| Q |
505 |
tgtaaatt-aatttcatggtttcgttcactcttaattaatttgattcaacatttga |
559 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10337573 |
tctaaattaaatttcatggtttcgttcactcttaattaatttgattcaacatttga |
10337628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 20 - 559
Target Start/End: Original strand, 10299525 - 10300080
Alignment:
| Q |
20 |
gcaacaatgtgagccggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10299525 |
gcaacaatgtgagccggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtc |
10299624 |
T |
|
| Q |
120 |
ctacagaggctcatctgacacgcctgtacaatcggattttgcacgatctggattaaccacttcaaggctggattcaatgaggcatcggagtctgaaggat |
219 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| |||||||||| || |||||||||||||||||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
10299625 |
ctacacaggctcatctgacatgcctgtacaatcagattttgcacaatttggattaaccacttcaaggctgcagtcattgaggcatcggagtctgaaggat |
10299724 |
T |
|
| Q |
220 |
attatccagtttgaatcaggttcatcacatgcatctagctctcagggccctcgga---------------accctcaaacccttgagggcgagagttctc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10299725 |
attatccagtttgaatcaggttcatcacatgcatctagctctcagggccctcggactcctctggctctgaaccctcaaacccttgagggcgagagttctc |
10299824 |
T |
|
| Q |
305 |
gggctcagagcaatcggtagaatctcaaacagtggtttttcctcagttttacgtatcatgaaattttaataagtgttctggagtttgtgacacaaaggat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10299825 |
gggctcagagcaatcggtagaatctcaaacagtggtttttcctcagttttacgtatcatgaaattttaataagtgttctggagtttgtgacacaaaggat |
10299924 |
T |
|
| Q |
405 |
tatgtctgatatgtagcaaacaaacttgtatggttctgctttgttttggaaatgaaagttcaaaagtattctgaaatgatgtatagtgtttttacattac |
504 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
10299925 |
tatgtctgatatgtagcaaaaaagcttgtatggttctgctttgttttggaaatgaaagttcaaaagtattctgaaatgttgcatagtgtttttacattac |
10300024 |
T |
|
| Q |
505 |
tgtaaatt-aatttcatggtttcgttcactcttaattaatttgattcaacatttga |
559 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10300025 |
tctaaattaaatttcatggtttcgttcactcttaattaatttgattcaacatttga |
10300080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 618 - 749
Target Start/End: Original strand, 10300083 - 10300214
Alignment:
| Q |
618 |
ctacatggtaataagaatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattc |
717 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10300083 |
ctacatggtaataaggatattcttaaatagcaagaagagattgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattc |
10300182 |
T |
|
| Q |
718 |
atgtataaatatttacagcataaactatgatt |
749 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |
|
|
| T |
10300183 |
atgtataaatatttacagcatagactatgatt |
10300214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 618 - 749
Target Start/End: Original strand, 10337631 - 10337762
Alignment:
| Q |
618 |
ctacatggtaataagaatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattc |
717 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10337631 |
ctacatggtaataaggatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattccttctttctcaaattc |
10337730 |
T |
|
| Q |
718 |
atgtataaatatttacagcataaactatgatt |
749 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10337731 |
atgtataaatatttacagcataaactatgatt |
10337762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 618 - 749
Target Start/End: Original strand, 10320515 - 10320650
Alignment:
| Q |
618 |
ctacatggtaataagaatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctagctagcattcctcttttctcaaattc |
717 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10320515 |
ctacatggtaataaggatattcttaaatagcaagaagagtttgttgctagcttttttaacaagaatttgttctacctagcattcctcttttctcaaattc |
10320614 |
T |
|
| Q |
718 |
atgtataa----atatttacagcataaactatgatt |
749 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| |
|
|
| T |
10320615 |
atgtataaatatatatatacagcataaactatgatt |
10320650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 6e-36; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 35629312 - 35629167
Alignment:
| Q |
35 |
ggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtcctacagaggctcatc |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||| ||| |||| |||||||||||||| | ||||||| |
|
|
| T |
35629312 |
ggaggtcttttcatgatgatataagtgtgattgttgtgttctttgacaaaacgtcgtttctgaggatgcccgtacataatttgtcctacaaaagctcatc |
35629213 |
T |
|
| Q |
135 |
tgacacgcctgtacaatcggattttgcacgatctggattaaccact |
180 |
Q |
| |
|
||||| ||| || ||| | ||||||||| ||||||||||||||| |
|
|
| T |
35629212 |
tgacagacctacaccatctgcttttgcacggtctggattaaccact |
35629167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 35632489 - 35632337
Alignment:
| Q |
23 |
acaatgtgagccggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtccta |
122 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||| ||||| || ||||| ||||| || |||| |||||||||||| |
|
|
| T |
35632489 |
acaatatgagcaggaggtcttttcatgatgatataagtgtcattgttttgttcttggccaaaaagttgtttctgaggcggcgcgtacataatttgtccta |
35632390 |
T |
|
| Q |
123 |
cagaggctcatctgacacgcctgtacaatcggattttgcacgatctggattaa |
175 |
Q |
| |
|
|| | |||||| |||||||||| | | ||| ||||||||||| |||||||||| |
|
|
| T |
35632389 |
catatgctcatttgacacgcctctgccatctgattttgcacggtctggattaa |
35632337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 35635732 - 35635631
Alignment:
| Q |
35 |
ggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttccgaggcagcctgtacttaatttgtcctacagaggctcatc |
134 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| ||| |||| ||| ||| |||||||||||||| | ||||||| |
|
|
| T |
35635732 |
ggaggtattttcatgatgatataagtgtgattgttgtgttcttggacaaaaagtcgattctgaggatgcccctacataatttgtcctacaaaagctcatc |
35635633 |
T |
|
| Q |
135 |
tg |
136 |
Q |
| |
|
|| |
|
|
| T |
35635632 |
tg |
35635631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 435 - 505
Target Start/End: Complemental strand, 35634839 - 35634769
Alignment:
| Q |
435 |
tggttctgctttgttttggaaatgaaagttcaaaagtattctgaaatgatgtatagtgtttttacattact |
505 |
Q |
| |
|
||||| ||| ||||||||||||||||||| |||||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
35634839 |
tggttgtgccttgttttggaaatgaaagtgcaaaagtattctgaaatgctgtatactgtttttaaattact |
35634769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 35634333 - 35634262
Alignment:
| Q |
28 |
gtgagccggaggtcttttcatgatgatataagtgtgattgtggtgttcttggacaaaacgtcgtttccgagg |
99 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||| |||| |
|
|
| T |
35634333 |
gtgagcaggaggtcttttcgtgatgatataagtgtgattgttgtgttctttgacaaaaattcgtttctgagg |
35634262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 503
Target Start/End: Complemental strand, 35631982 - 35631897
Alignment:
| Q |
418 |
tagcaaacaaacttgtatggttctgctttgttttggaaatgaaagttcaaaagtattctgaaatgatgtatagtgtttttacatta |
503 |
Q |
| |
|
||||||| ||| |||| || |||||| |||||| |||||| ||||||||| ||||| ||||||| | |||| | ||||||||||| |
|
|
| T |
35631982 |
tagcaaataaaattgtgtgcttctgccttgtttgtgaaatggaagttcaaatgtattttgaaatgctttatactatttttacatta |
35631897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 443
Target Start/End: Complemental strand, 35635265 - 35635190
Alignment:
| Q |
372 |
aataagtgttctggagtttgtgacacaa-aggattatgtctga---tatgtagcaaacaaacttgtatggttctgc |
443 |
Q |
| |
|
||||||||| |||||||||||||||||| || |||||||||| ||| ||||||| |||||||| ||||||||| |
|
|
| T |
35635265 |
aataagtgtcctggagtttgtgacacaagagttttatgtctgaaactatatagcaaataaacttgtttggttctgc |
35635190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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