View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14813_low_11 (Length: 481)
Name: NF14813_low_11
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14813_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 90 - 410
Target Start/End: Original strand, 23469082 - 23469401
Alignment:
| Q |
90 |
atatgttgccaacaatgtggttttgcttcattccatttggctgcttgattaagtgtaaattatcaaagagagttgactttatgatctggcttgcagttgt |
189 |
Q |
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| T |
23469082 |
atatattgccaacaatatggttttgcttcattacatttggctgcttgattaagtgtaaattatcaaagagagttgactttatgatctggcttgcagttgt |
23469181 |
T |
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| Q |
190 |
gttatgtttgaatgctagaaataatatcatgttcaaaggtgctaaattttatggttctaacttagggttggtttataaataggatggaggaaaattcttg |
289 |
Q |
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| T |
23469182 |
gttatgtttgaatgctagaaataatatcatattcaaaggtgctaaattttatggttctaacttagggtt-gtttataaataggatggaggaaaattcttg |
23469280 |
T |
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| Q |
290 |
ttttaaattgcattattttgtgatttaaccccatttgttgtgttcaattagtttgaaatattcaacatccggtattgacggataagagtagctcttgtat |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23469281 |
ttttaaattgcattattttgtgatttaaccccatttgttgtgttcaattagtttgaaatattcaacatccggtattgacggataagagtagctcttgtat |
23469380 |
T |
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| Q |
390 |
cagaaatttattttactcaac |
410 |
Q |
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| T |
23469381 |
cagaaatttattttactcaac |
23469401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 43296534 - 43296574
Alignment:
| Q |
242 |
ggttctaacttagggttggtttataaataggatggaggaaa |
282 |
Q |
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| T |
43296534 |
ggttttaacttagggttggtttataaataggatgggggaaa |
43296574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 13291875 - 13291942
Alignment:
| Q |
124 |
atttggctgcttgattaagtgtaaattatcaaagagagttgactttatgatctggcttgcagttgtgt |
191 |
Q |
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| T |
13291875 |
atttgcctccttgattaagtgcaagttatcaatgaggggtgactttataatctggcttgcaattgtgt |
13291942 |
T |
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