View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14813_low_12 (Length: 449)
Name: NF14813_low_12
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14813_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 445
Target Start/End: Complemental strand, 29927697 - 29927256
Alignment:
| Q |
9 |
ctatgctgagatgtctacattggatagtgatttgtctagttgttatacttgaaatatttaacaaatttagttatcagttgctaacacactctgtatcaaa |
108 |
Q |
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| T |
29927697 |
ctatgctgagatgtctacattggatagtgatctgaatagttgttatacttgaaatatttaacaaatttagttatcacttgctaacacactctatatcaaa |
29927598 |
T |
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| Q |
109 |
aatttgtaggtgtattctaacaaatatctatgtaacaaataagatataacgatccacgnnnnnnn-acataataatgaataatgtggtatgtgggacttg |
207 |
Q |
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| T |
29927597 |
aatctgtgggtgtattctaacaaatatctatgtaacgaataagagataacgatccacgttttttttacataataatgaataatgtggtatgtgggacttg |
29927498 |
T |
|
| Q |
208 |
gtttatcttgggcacctcttaattattctcatgcacttagctgtagataatgttgacacctatcatcattgagaattaggtacaaacatgcctaacctaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29927497 |
gtttatcttgggcacctcttaattattctcatgcacttagctgtagataatgttgacacctatcatcattgagaattaggtacaagcatgcctaacctaa |
29927398 |
T |
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| Q |
308 |
tta----aatcaagaaagctccttgatgctaagcttataaattaaaagcacacaacttgagctgacaacaagccaatcattcgatttgtgaggctggagt |
403 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29927397 |
ttagtttaatcaagaaagctccttgatgctaagcttataaattaaaagcacacaacttgagctgacaacaagccaatcattcgatttgtgaggctggagt |
29927298 |
T |
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| Q |
404 |
gcattcattatccagatttcaattcctaacttgacttggttc |
445 |
Q |
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| T |
29927297 |
gcattcattatccagatttcaattcctaacttgacttggttc |
29927256 |
T |
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