View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14813_low_14 (Length: 419)

Name: NF14813_low_14
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14813_low_14
NF14813_low_14
[»] chr2 (1 HSPs)
chr2 (146-217)||(29522108-29522179)
[»] chr7 (1 HSPs)
chr7 (160-217)||(17978242-17978299)
[»] chr6 (1 HSPs)
chr6 (76-113)||(32504383-32504420)
[»] chr3 (1 HSPs)
chr3 (76-113)||(19972810-19972847)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 29522108 - 29522179
Alignment:
Q  146 cagttcctattcttttttcccaattgatttacctaagatattaaaagggagaacatttgaggcaaattattt 217  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  29522108 cagttcccattcttttttcccaattgatttacctaagatattaaaagagaggacatttgaggcaaaatattt 29522179  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 17978242 - 17978299
Alignment:
Q  160 ttttcccaattgatttacctaagatattaaaagggagaacatttgaggcaaattattt 217  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  17978242 ttttcccaattgatttacctaagatattaaaagagaggacatttgaggcaaattattt 17978299  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 32504420 - 32504383
Alignment:
Q  76 tctaaagctagctctaattccaaccgtgaatagattag 113  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  32504420 tctaaagctagctctaattccaaccatgaatagattag 32504383  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 19972810 - 19972847
Alignment:
Q  76 tctaaagctagctctaattccaaccgtgaatagattag 113  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  19972810 tctaaagctagctctaattccaaccatgaatagattag 19972847  T

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