View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14813_low_18 (Length: 292)

Name: NF14813_low_18
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14813_low_18
NF14813_low_18
[»] chr8 (10 HSPs)
chr8 (16-286)||(6885452-6885718)
chr8 (16-105)||(28276312-28276401)
chr8 (122-272)||(21315222-21315372)
chr8 (123-193)||(24645434-24645504)
chr8 (151-270)||(28276150-28276268)
chr8 (121-194)||(26394134-26394207)
chr8 (151-194)||(13314423-13314466)
chr8 (121-164)||(15064830-15064873)
chr8 (126-167)||(17965601-17965642)
chr8 (218-270)||(14528778-14528830)
[»] chr1 (16 HSPs)
chr1 (16-269)||(44795863-44796112)
chr1 (19-277)||(26648388-26648642)
chr1 (16-230)||(23037410-23037619)
chr1 (123-253)||(28008705-28008834)
chr1 (16-277)||(15812504-15812760)
chr1 (158-227)||(27972482-27972551)
chr1 (121-194)||(12209170-12209243)
chr1 (121-186)||(17120945-17121010)
chr1 (218-270)||(16112400-16112452)
chr1 (122-194)||(31235387-31235459)
chr1 (121-167)||(16787210-16787256)
chr1 (123-165)||(27117199-27117241)
chr1 (121-186)||(16360464-16360529)
chr1 (121-166)||(24281873-24281918)
chr1 (153-194)||(51472690-51472731)
chr1 (218-270)||(33191361-33191413)
[»] chr3 (8 HSPs)
chr3 (17-277)||(16221853-16222109)
chr3 (16-270)||(3115775-3116024)
chr3 (121-270)||(5508929-5509077)
chr3 (16-96)||(5508828-5508908)
chr3 (122-270)||(16245080-16245228)
chr3 (125-270)||(8116323-8116465)
chr3 (122-270)||(12772277-12772425)
chr3 (236-270)||(31285334-31285368)
[»] chr2 (12 HSPs)
chr2 (28-270)||(19199523-19199761)
chr2 (121-277)||(13777018-13777173)
chr2 (122-191)||(22568196-22568265)
chr2 (123-194)||(12950484-12950554)
chr2 (121-196)||(17890590-17890665)
chr2 (218-274)||(23933010-23933066)
chr2 (124-187)||(20173258-20173321)
chr2 (219-270)||(20173996-20174047)
chr2 (121-167)||(45621382-45621428)
chr2 (122-191)||(25887332-25887401)
chr2 (121-166)||(29031772-29031817)
chr2 (121-165)||(26291659-26291703)
[»] chr7 (15 HSPs)
chr7 (40-269)||(5107157-5107382)
chr7 (16-105)||(1585030-1585119)
chr7 (121-270)||(19153810-19153958)
chr7 (121-270)||(20753209-20753357)
chr7 (16-95)||(2574207-2574286)
chr7 (149-261)||(2574044-2574157)
chr7 (151-277)||(1585161-1585288)
chr7 (122-191)||(2348359-2348428)
chr7 (121-167)||(18663022-18663068)
chr7 (122-270)||(10941841-10941989)
chr7 (236-270)||(18202572-18202606)
chr7 (121-186)||(6006593-6006657)
chr7 (217-266)||(8978368-8978417)
chr7 (151-187)||(3327027-3327063)
chr7 (122-166)||(18202666-18202710)
[»] chr4 (16 HSPs)
chr4 (165-277)||(20829186-20829298)
chr4 (16-105)||(20829338-20829427)
chr4 (122-195)||(9850871-9850944)
chr4 (122-194)||(17672582-17672654)
chr4 (121-195)||(5956548-5956622)
chr4 (122-270)||(24638816-24638963)
chr4 (121-191)||(11780934-11781004)
chr4 (125-191)||(19635982-19636048)
chr4 (121-193)||(14572408-14572480)
chr4 (121-195)||(8969162-8969236)
chr4 (121-162)||(9053254-9053295)
chr4 (237-270)||(19927897-19927930)
chr4 (122-167)||(25120687-25120732)
chr4 (121-165)||(12839258-12839302)
chr4 (218-270)||(19092991-19093043)
chr4 (151-191)||(19604932-19604972)
[»] chr6 (5 HSPs)
chr6 (122-270)||(4340336-4340483)
chr6 (122-170)||(1635578-1635626)
chr6 (219-270)||(8245617-8245668)
chr6 (125-168)||(15466967-15467010)
chr6 (16-83)||(18870802-18870869)
[»] chr5 (14 HSPs)
chr5 (122-263)||(18938426-18938566)
chr5 (199-270)||(18831140-18831211)
chr5 (121-181)||(19762720-19762780)
chr5 (219-270)||(18207622-18207673)
chr5 (219-270)||(34488322-34488373)
chr5 (121-166)||(24264927-24264972)
chr5 (121-166)||(24341558-24341603)
chr5 (221-270)||(24661936-24661985)
chr5 (122-167)||(25401792-25401837)
chr5 (123-181)||(17171002-17171060)
chr5 (236-270)||(24266357-24266391)
chr5 (236-270)||(24342988-24343022)
chr5 (121-167)||(26066717-26066763)
chr5 (53-105)||(18938363-18938415)
[»] scaffold0001 (1 HSPs)
scaffold0001 (153-270)||(81224-81341)
[»] scaffold0005 (1 HSPs)
scaffold0005 (121-193)||(244896-244968)
[»] scaffold0128 (1 HSPs)
scaffold0128 (121-167)||(57-103)
[»] scaffold0008 (1 HSPs)
scaffold0008 (237-270)||(55572-55605)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 6885452 - 6885718
Alignment:
Q  16 aaattggccttccagttttccttaaggctatgaagtgccaaagttccattaggttagaacatccatgaaacttaggtatctaaactcacannnnnnnnnn 115  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||              
T  6885452 aaattggccttcaagttttccgtaaggctatgaagtgccaaagttccattaggttagaacatccatgaaatttaggtatctaaactcacactctccttct 6885551  T
Q  116 nnnnnggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaa 215  Q
          |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6885552 ca----gtagttctacaaacgggcagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaa 6885647  T
Q  216 tcgcttgtttccctaatctgtaactagttacatcctaggtttagcagattttactaagtcttgatgatgtc 286  Q
     |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  6885648 ccgcttgtttccctaatctataactagttacatcctaggttcagcagattttactaagtcttgataatgtc 6885718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 28276401 - 28276312
Alignment:
Q  16 aaattggccttccagttttccttaaggctatgaagtgccaaagttccattaggttagaacatccatgaaacttaggtatctaaactcaca 105  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||||||| |||||  |||||||||| |||| |||||| ||| ||||    
T  28276401 aaattggccttccggtttttcctaaggctatgaagtgccaaagttccattaagttagcccatccatgaatcttaagtatctcaacacaca 28276312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 122 - 272
Target Start/End: Original strand, 21315222 - 21315372
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgctt 221  Q
    |||||||||||||||| || |  ||| ||||||||||||| |||||||| | ||||||| |||||||||| |     |||||||||| |||||  | |||    
T  21315222 gtagttctacaaacgggcaacactatcagcgtctaccttatcaagggtttaaaagaatgtttctattaggctacgacttatttccttcaagaagacactt 21315321  T
Q  222 gtttccctaatctgtaactagttacatcctaggtttagcagattttactaa 272  Q
    |||||| |||||  ||||||||||| ||||||||| |  ||||||||||||    
T  21315322 gtttccttaatcactaactagttacctcctaggttcaatagattttactaa 21315372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 24645434 - 24645504
Alignment:
Q  123 tagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtt 193  Q
    |||||||||||||||||| || ||| | ||||||||||||||| ||| ||| |||||||||||| ||||||    
T  24645434 tagttctacaaacggacacccctatcaacgtctaccttaccaaaggtcaaggagaatggttctactaggtt 24645504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 270
Target Start/End: Complemental strand, 28276268 - 28276150
Alignment:
Q  151 cgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgcttgtttccctaatctgtaactagttacatcc 250  Q
    |||||||||||||||||||  || |||| |||| ||||| |||  | || |||||||| ||| || || |||||||| |||||| |||||||||||  ||    
T  28276268 cgtctaccttaccaagggtcgaggagaacggttatattaagttcaaatt-atttccttcaagcaaccgattgtttccttaatctctaactagttaccacc 28276170  T
Q  251 taggtttagcagattttact 270  Q
    |||||| || ||||||||||    
T  28276169 taggttcagtagattttact 28276150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 26394207 - 26394134
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggttt 194  Q
    |||||||||||||||||||| || ||| || |||||||||||  ||||||||  ||||||||| || |||||||    
T  26394207 ggtagttctacaaacggacaaccctatcagtgtctaccttactgagggttaaagagaatggttatactaggttt 26394134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 13314466 - 13314423
Alignment:
Q  151 cgtctaccttaccaagggttaagaagaatggttctattaggttt 194  Q
    |||||||||||||||||||| | || ||||||||||||||||||    
T  13314466 cgtctaccttaccaagggtttaaaaaaatggttctattaggttt 13314423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 15064873 - 15064830
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttacca 164  Q
    ||||||||||||||| | ||||||||| ||||||||||||||||    
T  15064873 ggtagttctacaaacaggcagccttatcagcgtctaccttacca 15064830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 17965601 - 17965642
Alignment:
Q  126 ttctacaaacggacagccttattagcgtctaccttaccaagg 167  Q
    |||||||||| ||||||| ||| |||||||||||||||||||    
T  17965601 ttctacaaacagacagccctatcagcgtctaccttaccaagg 17965642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 14528778 - 14528830
Alignment:
Q  218 gcttgtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    |||||||||||||||   |||||| |||||||||| ||| |||||||||||||    
T  14528778 gcttgtttccctaattaataactatttacatcctaagttcagcagattttact 14528830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 44795863 - 44796112
Alignment:
Q  16 aaattggccttccagttttccttaaggctatgaagtgccaaagttccattaggttagaacatccatgaaacttaggtatctaaactcacannnnnnnnnn 115  Q
    ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||  |||||||||| ||||||||||| ||||||||              
T  44795863 aaattggccttccagttttccctaaggctatgaagtgtcaaacttccattaggttagcccatccatgaatcttaggtatctcaactcacactctccctct 44795962  T
Q  116 nnnnnggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaa 215  Q
          |||||||||||||||| ||  | ||| | ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||| ||    
T  44795963 ca----gtagttctacaaacgggcaatcctatcaacgtctaccttaccaagggtcaagaagaatggttctattaggtttcattttatttccttcaagcaa 44796058  T
Q  216 tcgcttgtttccctaatctgtaactagttacatcctaggtttagcagattttac 269  Q
     ||||||||||| |||||| ||||||||||| ||||| ||| ||||||||||||    
T  44796059 ccgcttgtttccttaatctctaactagttacctcctaagttcagcagattttac 44796112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 26648642 - 26648388
Alignment:
Q  19 ttggccttccagttttccttaaggctatgaagtgccaaagttccattaggttagaacatccatgaaacttaggtatctaaactcacannnnnnnnnnnnn 118  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||| ||||||||                 
T  26648642 ttggtcttccagttttccctaaggctatgaagtgccaaagttccattaggttaacccatccatgaatcttaggtatctcaactcacactctccctctc-- 26648545  T
Q  119 nnggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcg 218  Q
      || ||||||||||||||  |||  ||| ||||| ||||||||||||||| |||| |||||||||| |||||||| | ||||||||||| ||| ||       
T  26648544 --ggcagttctacaaacggggagcactatcagcgtttaccttaccaagggtcaagaggaatggttctgttaggtttcaatttatttccttcaagcaacta 26648447  T
Q  219 cttgtttccctaatctgtaactagttacatcctaggtttagcagattttactaagtctt 277  Q
    |||||||||||||||| ||||||||||| || | |||| ||||||||||||| ||||||    
T  26648446 cttgtttccctaatctctaactagttacctctttggttcagcagattttactcagtctt 26648388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 23037619 - 23037410
Alignment:
Q  16 aaattggccttccagttttccttaaggctatgaagtgccaaagttccattaggttagaacatccatgaaacttaggtatctaaactcacannnnnnnnnn 115  Q
    ||||||| ||||||||||||| |||| |||||||||| ||||||||||||||||||   |||||||||| ||||||||| | ||||||||              
T  23037619 aaattggtcttccagttttccctaagactatgaagtgtcaaagttccattaggttaacccatccatgaatcttaggtatgtcaactcacactttccctct 23037520  T
Q  116 nnnnnggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaa 215  Q
         ||||||||||||||||| ||||| | | || ||||||||||| ||||   |||||||||||||||||||||||| ||||||||||||| ||| |     
T  23037519 c----ggtagttctacaaacgggcagccctgt-agagtctaccttacgaaggtgaaagaagaatggttctattaggttttagtttatttccttcaagcat 23037425  T
Q  216 tcgcttgtttcccta 230  Q
     ||||||||||||||    
T  23037424 ccgcttgtttcccta 23037410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 123 - 253
Target Start/End: Original strand, 28008705 - 28008834
Alignment:
Q  123 tagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgcttg 222  Q
    ||||||||||||||| ||||| ||| || |||||||||||||| |||| |  ||||| ||||||||||| |||| ||||||||||| ||||| || ||||    
T  28008705 tagttctacaaacgggcagccctatcagtgtctaccttaccaaaggtttaagagaattgttctattaggattga-tttatttccttcaagaagtcacttg 28008803  T
Q  223 tttccctaatctgtaactagttacatcctag 253  Q
    ||||| |||| | ||||||||||||||||||    
T  28008804 tttccttaatttctaactagttacatcctag 28008834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 15812760 - 15812504
Alignment:
Q  16 aaattggccttccagttttccttaaggctatgaagtgccaaagttccattaggttagaacatccatgaaacttaggtatctaaactcacannnnnnnnnn 115  Q
    ||||| |||||| |||||| | |||||||||||||| ||||||||||||||||||||  |||||||||| ||||||||||| ||| ||||              
T  15812760 aaattagccttctagtttttcctaaggctatgaagtaccaaagttccattaggttagcccatccatgaatcttaggtatctcaacgcacactctccctct 15812661  T
Q  116 nnnnnggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaa 215  Q
          || |||||||||| ||  |||  ||| || ||||||||||||||||||  || ||||||||||||||| | |  | | ||||||||| ||| ||    
T  15812660 ct----gtggttctacaaatgggtagctctatcagtgtctaccttaccaagggtcgaggagaatggttctatta-gatccaatgtatttccttcaagcaa 15812566  T
Q  216 tcgcttgtttccctaatctgtaactagttacatcctaggtttagcagattttactaagtctt 277  Q
     || |||||||| |||||| ||||||||||  ||||||||| ||||||||||||| ||||||    
T  15812565 ccgtttgtttccgtaatctctaactagttatctcctaggttcagcagattttactcagtctt 15812504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 27972482 - 27972551
Alignment:
Q  158 cttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgcttgtttcc 227  Q
    ||||||||||||| |  ||||||||||||||||||| ||||||||||||||||||||  | |||||||||    
T  27972482 cttaccaagggtttaagagaatggttctattaggttagagtttatttcctttaagaagacacttgtttcc 27972551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 12209170 - 12209243
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggttt 194  Q
    |||||||||| |||||| ||||| ||| | ||||||||||||||||||| ||  ||||||| ||||||| ||||    
T  12209170 ggtagttctaaaaacgggcagccctatcaacgtctaccttaccaagggtcaaagagaatgggtctattatgttt 12209243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 186
Target Start/End: Complemental strand, 17121010 - 17120945
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttcta 186  Q
    ||||||||||||||||  || || |||||| |||| ||||||||||||| ||| ||||||||||||    
T  17121010 ggtagttctacaaacgagcacccctattagtgtctgccttaccaagggtaaaggagaatggttcta 17120945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 16112400 - 16112452
Alignment:
Q  218 gcttgtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    |||||||||||||||   ||||||||||||||||||||| || ||||||||||    
T  16112400 gcttgtttccctaattaataactagttacatcctaggttcagtagattttact 16112452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 31235459 - 31235387
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggttt 194  Q
    ||||||||||||||||||| | |||| | ||||||||||||||| |||| |  |||||| |||||||| ||||    
T  31235459 gtagttctacaaacggacaactttatcatcgtctaccttaccaaaggtttaagagaatgtttctattaagttt 31235387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 16787256 - 16787210
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagg 167  Q
    ||||||| ||||||||| ||||| ||| |||||||||||||||||||    
T  16787256 ggtagttatacaaacgggcagccctatcagcgtctaccttaccaagg 16787210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 27117241 - 27117199
Alignment:
Q  123 tagttctacaaacggacagccttattagcgtctaccttaccaa 165  Q
    |||||| ||||| |||||||| |||||||||||||||||||||    
T  27117241 tagttcaacaaatggacagccctattagcgtctaccttaccaa 27117199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 16360464 - 16360529
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttcta 186  Q
    ||||||||||||||||  ||||  ||| | |||||||||||||||||||  || ||||||||||||    
T  16360464 ggtagttctacaaacgagcagctctatcaacgtctaccttaccaagggtcgaggagaatggttcta 16360529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 24281873 - 24281918
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaag 166  Q
    ||||||||||||||||| ||||| ||| ||||||||| ||||||||    
T  24281873 ggtagttctacaaacgggcagccctatcagcgtctacattaccaag 24281918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 51472731 - 51472690
Alignment:
Q  153 tctaccttaccaagggttaagaagaatggttctattaggttt 194  Q
    |||||||||||||||||| |  ||||||||||||||||||||    
T  51472731 tctaccttaccaagggtttaagagaatggttctattaggttt 51472690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 33191361 - 33191413
Alignment:
Q  218 gcttgtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    |||||||||||||||   ||||||||||||||||||||| | || ||||||||    
T  33191361 gcttgtttccctaattaataactagttacatcctaggttcaacatattttact 33191413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 277
Target Start/End: Original strand, 16221853 - 16222109
Alignment:
Q  17 aattggccttccagttttccttaaggctatgaagtgccaaagttccattaggttagaacatccatgaaacttaggtatctaaactcacannnnnnnnnnn 116  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||||||   |||||||||| || |||||||| ||||||||               
T  16221853 aattggtcttccagttttccctaaggctatgaagtaccaaagttccattaggttaacccatccatgaatctaaggtatctcaactcacactttccatctc 16221952  T
Q  117 nnnnggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaat 216  Q
        ||||||||||||||||  ||||| ||| || |||||| ||||||| ||| ||||||||||| |||||||||||| ||||||||||||| ||||||     
T  16221953 ----ggtagttctacaaacgagcagccctatcagtgtctactttaccaacggtcaagaagaatggatctattaggttttagtttatttccttcaagaaac 16222048  T
Q  217 cgcttgtttccctaatctgtaactagttacatcctaggtttagcagattttactaagtctt 277  Q
    | ||||  |||||||||| ||||| ||||| ||||||||| ||||||||||||| ||||||    
T  16222049 ctcttgaatccctaatctctaacttgttacctcctaggttcagcagattttacttagtctt 16222109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 3116024 - 3115775
Alignment:
Q  16 aaattggccttccagttttccttaaggctatgaagtgccaaagttccattaggttagaacatccatgaaacttaggtatctaaactcacannnnnnnnnn 115  Q
    ||||||||||||||||||| | |||||||||||||||| |||||||||||||||||   |||||||||| ||||||||||||||  ||||              
T  3116024 aaattggccttccagtttttcctaaggctatgaagtgcaaaagttccattaggttaacccatccatgaatcttaggtatctaaatgcacactctccctct 3115925  T
Q  116 nnnnnggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaa 215  Q
         ||||||||||||||||| ||||||||| || ||||||||||||||||||  || ||||| ||||||||||| || |  |||||||||| ||| ||    
T  3115924 c----ggtagttctacaaacgggcagccttatcagtgtctaccttaccaagggtcgaggagaatcgttctattagg-ttcaacttatttccttcaagcaa 3115830  T
Q  216 tcgcttgtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
     |  |||||||| |||| | ||||||||||| || |||||| |||||||||||||    
T  3115829 ccatttgtttccttaatatctaactagttacctcataggttcagcagattttact 3115775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 270
Target Start/End: Original strand, 5508929 - 5509077
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgct 220  Q
    ||||||||||||||| |  |||| ||| ||||| ||||||||||| |||  || ||||| ||||||||||||   | || |||||||| ||| || | ||    
T  5508929 ggtagttctacaaacaggaagccctatgagcgtgtaccttaccaaaggtcgaggagaattgttctattaggtaaaactt-atttccttcaagcaaccact 5509027  T
Q  221 tgtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    |||||||||||||| ||||||||||| | ||||||| |||||||||||||    
T  5509028 tgtttccctaatctctaactagttaccttctaggttcagcagattttact 5509077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 5508828 - 5508908
Alignment:
Q  16 aaattggccttccagttttccttaaggctatgaagtgccaaagttccattaggttagaacatccatgaaacttaggtatct 96  Q
    |||||| ||||| |||||| | |||||||||||||||  |||||||||||| |||||  |||||||||| | |||||||||    
T  5508828 aaattgaccttcaagtttttcataaggctatgaagtgttaaagttccattatgttagcccatccatgaatcataggtatct 5508908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 270
Target Start/End: Complemental strand, 16245228 - 16245080
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgctt 221  Q
    ||||||||||||| ||  |||| ||| ||||||||||||| |||||||| |  ||||||||| || |||| |  |  |||||||||| ||| || | |||    
T  16245228 gtagttctacaaatgggaagccctatcagcgtctaccttagcaagggtttaagagaatggttatactaggatacaacttatttccttcaagtaaacactt 16245129  T
Q  222 gtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
     ||||| ||||   ||||||||||| ||||||||| |||| ||||||||    
T  16245128 atttccttaattattaactagttacctcctaggttcagcatattttact 16245080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 270
Target Start/End: Complemental strand, 8116465 - 8116323
Alignment:
Q  125 gttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgcttgtt 224  Q
    |||||||||||||| |||| ||| || ||||||||||||||||||| |  ||||||||||| |||   |  || |||||||||||||| |  | ||||||    
T  8116465 gttctacaaacggaaagccctataagtgtctaccttaccaagggtttaagagaatggttctttta---tacagcttatttcctttaagcagacacttgtt 8116369  T
Q  225 tccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    ||| ||||   || |||||||  ||||| ||| |||||||||||||    
T  8116368 tccttaattattacctagttatctcctaagttaagcagattttact 8116323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 270
Target Start/End: Complemental strand, 12772425 - 12772277
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgctt 221  Q
    |||||||||||||||| || || ||| |||||||||||||| ||| ||| |  |||||||||||| |||| |  |  |||||||||| ||| |  |  ||    
T  12772425 gtagttctacaaacgggcatccctatcagcgtctaccttactaagagtttaagagaatggttctactaggctacaacttatttccttcaagcagacagtt 12772326  T
Q  222 gtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
     ||||| ||||   ||||||||||| ||||||||| || ||||||||||    
T  12772325 ctttccttaattattaactagttacctcctaggttcagtagattttact 12772277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Complemental strand, 31285368 - 31285334
Alignment:
Q  236 taactagttacatcctaggtttagcagattttact 270  Q
    ||||||||||||||||||||||| |||||||||||    
T  31285368 taactagttacatcctaggtttaacagattttact 31285334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 28 - 270
Target Start/End: Complemental strand, 19199761 - 19199523
Alignment:
Q  28 cagttttccttaaggctatgaagtgccaaagttccattaggttagaacatccatgaaacttaggtatctaaactcacannnnnnnnnnnnnnnggtagtt 127  Q
    ||||||| | ||||||||||||||||||||  |||||||| |||   |||||||||| ||||||||||| ||||||||                ||||||    
T  19199761 cagtttttcctaaggctatgaagtgccaaaaatccattagattaacccatccatgaatcttaggtatctcaactcacactctccttctca----gtagtt 19199666  T
Q  128 ctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgcttgtttcc 227  Q
    ||||||| || ||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||| || |||||||||||    
T  19199665 ctacaaatgggcagccctatcagcgtctaccttaccaagggtcaagaagaatggttctattaggtttcaatttatttccttcaagcaaccgcttgtttcc 19199566  T
Q  228 ctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    ||||||| ||||||||||| ||||||||  |||| ||||||||    
T  19199565 ctaatctttaactagttacctcctaggtccagcatattttact 19199523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 121 - 277
Target Start/End: Original strand, 13777018 - 13777173
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgct 220  Q
    |||| ||||||||||||   ||| ||| |||||||||||||||||||||  || | ||||||| |||||||||  | || |||||||| ||| || | ||    
T  13777018 ggtatttctacaaacgggatgccctatcagcgtctaccttaccaagggtcgaggataatggttttattaggttcaactt-atttccttcaagcaaccact 13777116  T
Q  221 tgtttccctaatctgtaactagttacatcctaggtttagcagattttactaagtctt 277  Q
    ||||||| |||||| ||||||||||| ||||||||| ||||||||||||| ||||||    
T  13777117 tgtttccttaatctctaactagttacctcctaggttcagcagattttactcagtctt 13777173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 22568196 - 22568265
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaagggt-taagaagaatggttctattagg 191  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||    
T  22568196 gtagttctacaaacgggcagccctatcagcgtctaccttaccaagggtctaag-agaatggttctattagg 22568265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 12950554 - 12950484
Alignment:
Q  123 tagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggttt 194  Q
    ||||||||||||||| ||||| |||   |||||||||||||||||||| |  ||||||||||||||||||||    
T  12950554 tagttctacaaacgggcagccctatct-cgtctaccttaccaagggtttaagagaatggttctattaggttt 12950484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 17890590 - 17890665
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttga 196  Q
    |||| ||||||| ||||  |||| ||| |||||||||||| ||||||||  || ||||||||||||||||||||||    
T  17890590 ggtaattctacagacgggaagccatatcagcgtctaccttgccaagggtcgaggagaatggttctattaggtttga 17890665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 23933066 - 23933010
Alignment:
Q  218 gcttgtttccctaatctgtaactagttacatcctaggtttagcagattttactaagt 274  Q
    |||||||||||||||   ||||||||||||||||| ||| | |||||||||||||||    
T  23933066 gcttgtttccctaattaataactagttacatcctaagttcaacagattttactaagt 23933010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 20173321 - 20173258
Alignment:
Q  124 agttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctat 187  Q
    |||||||||||| | ||||| ||| | |||||||||||||||||||| |  |||||||||||||    
T  20173321 agttctacaaacaggcagccctatcaacgtctaccttaccaagggtttaagagaatggttctat 20173258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 20174047 - 20173996
Alignment:
Q  219 cttgtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    ||||||||||||||   ||||||||||||||||| |||||| ||||||||||    
T  20174047 cttgtttccctaattaataactagttacatcctaagtttagtagattttact 20173996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 45621428 - 45621382
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagg 167  Q
    |||||||||||||||||||| || ||| | |||||||||||||||||    
T  45621428 ggtagttctacaaacggacaaccctatcaacgtctaccttaccaagg 45621382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 25887401 - 25887332
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattagg 191  Q
    |||||||||||||  | || || ||| |||||||||||||||||||||| |  |||||||||||| ||||    
T  25887401 gtagttctacaaatcggcaaccctatcagcgtctaccttaccaagggtttaagagaatggttctactagg 25887332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 29031772 - 29031817
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaag 166  Q
    |||||||||||||||||||| || ||| | ||||||||||||||||    
T  29031772 ggtagttctacaaacggacaaccctatcaacgtctaccttaccaag 29031817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 26291659 - 26291703
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaa 165  Q
    ||||||| ||||||| ||||||| ||| |||||||||||||||||    
T  26291659 ggtagttttacaaactgacagccctatgagcgtctaccttaccaa 26291703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 269
Target Start/End: Original strand, 5107157 - 5107382
Alignment:
Q  40 aggctatgaagtgccaaagttccattaggttagaacatccatgaaacttaggtatctaaactcacannnnnnnnnnnnnnnggtagttctacaaacggac 139  Q
    ||||||||||||||||||||| |||||||||||  |||||||||| ||||||||||| ||||||||               | ||||| |||||| || |    
T  5107157 aggctatgaagtgccaaagttgcattaggttagcccatccatgaatcttaggtatctcaactcacactccccctctc----gatagttttacaaaagggc 5107252  T
Q  140 agccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgcttgtttccctaatctgtaac 239  Q
    | || ||| ||||||||||||||||||||| |||||||||||||| |||||||||   ||||||||||| ||  || ||||||||||| | ||||  |||    
T  5107253 aaccctatcagcgtctaccttaccaagggtcaagaagaatggttccattaggtttctatttatttccttcaactaaccgcttgtttccttcatctcgaac 5107352  T
Q  240 tagttacatcctaggtttagcagattttac 269  Q
    ||||||| ||||||||| | ||||||||||    
T  5107353 tagttacctcctaggttcatcagattttac 5107382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 1585030 - 1585119
Alignment:
Q  16 aaattggccttccagttttccttaaggctatgaagtgccaaagttccattaggttagaacatccatgaaacttaggtatctaaactcaca 105  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||  |||| ||||| ||||||||||| ||||||||    
T  1585030 aaattggccttccaattttccctaaggctatgaagtgccaaagttctattaggttagtccatctatgaatcttaggtatctcaactcaca 1585119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 121 - 270
Target Start/End: Original strand, 19153810 - 19153958
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgct 220  Q
    |||||||| ||||| || ||||| |||  || || |||||||||||| |  |||||||||||||||||||| || |  |||||||||| ||||||  |||    
T  19153810 ggtagttcaacaaatgggcagccctatccgcctccaccttaccaaggttcgagaagaatggttctattagg-ttcaacttatttccttcaagaaactgct 19153908  T
Q  221 tgtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    ||||||| ||| |  |||||| |||| ||||||||| |||| ||||||||    
T  19153909 tgtttccttaacccttaactacttacctcctaggttcagcaaattttact 19153958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 121 - 270
Target Start/End: Original strand, 20753209 - 20753357
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgct 220  Q
    |||||||| ||||| || ||||| |||  || || |||||||||||| |  |||||||||||||||||||| || |  |||||||||| ||||||  |||    
T  20753209 ggtagttcaacaaatgggcagccctatccgcctccaccttaccaaggttcgagaagaatggttctattagg-ttcaacttatttccttcaagaaactgct 20753307  T
Q  221 tgtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    ||||||| ||| |  |||||| |||| ||||||||| |||| ||||||||    
T  20753308 tgtttccttaacccttaactacttacctcctaggttcagcaaattttact 20753357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 2574286 - 2574207
Alignment:
Q  16 aaattggccttccagttttccttaaggctatgaagtgccaaagttccattaggttagaacatccatgaaacttaggtatc 95  Q
    |||||||  ||||| |||| | ||||||||||||||||||||||||||||||||||   ||||| |||| ||||||||||    
T  2574286 aaattggttttccaatttttcctaaggctatgaagtgccaaagttccattaggttaacccatccttgaatcttaggtatc 2574207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 2574157 - 2574044
Alignment:
Q  149 agcgtctaccttaccaagggttaa-gaagaatggttctattaggtttgagtttatttcctttaagaaatcgcttgtttccctaatctgtaactagttaca 247  Q
    ||||| ||||||||||||| | || || ||||||||||| |||||||  || | ||||||| ||| |  |||||||||||||| ||| |||||||||||     
T  2574157 agcgtttaccttaccaaggatgaaagacgaatggttctaataggtttcggtctttttccttaaagcagccgcttgtttccctagtctataactagttacc 2574058  T
Q  248 tcctaggtttagca 261  Q
    | ||||||||||||    
T  2574057 ttctaggtttagca 2574044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 277
Target Start/End: Original strand, 1585161 - 1585288
Alignment:
Q  151 cgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaag-aaatcgcttgtttccctaatctgtaactagttacatc 249  Q
    ||||| ||| | ||||||| |||||| |||||||||||| |  | ||||||||||||| ||| ||| | ||||||||  || ||| ||||||||||| ||    
T  1585161 cgtctgcctaaacaagggtcaagaaggatggttctattatggatcagtttatttccttcaagcaaaccacttgtttcgttagtctctaactagttacctc 1585260  T
Q  250 ctaggtttagcagattttactaagtctt 277  Q
    ||||||| | || |||||||| ||||||    
T  1585261 ctaggttcaacatattttacttagtctt 1585288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 2348428 - 2348359
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaagggt-taagaagaatggttctattagg 191  Q
    |||||||||||||||| || || ||| ||||||||||||||||| ||| ||||| ||||||||||||||||    
T  2348428 gtagttctacaaacgggcaaccctatcagcgtctaccttaccaatggtctaaga-gaatggttctattagg 2348359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 18663022 - 18663068
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagg 167  Q
    |||||||||||||||||||| || ||| |||||||||||||||||||    
T  18663022 ggtagttctacaaacggacaaccctatcagcgtctaccttaccaagg 18663068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 270
Target Start/End: Complemental strand, 10941989 - 10941841
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgctt 221  Q
    ||||||||||||||||  | |  ||| ||| |||||||||||||||||| |  |||||||||||  |||| |  |  |||||||||| ||| || | |||    
T  10941989 gtagttctacaaacgggaaactctatcagcctctaccttaccaagggtttaagagaatggttctgctaggctacaacttatttccttcaagcaaacactt 10941890  T
Q  222 gtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    |||||| ||||   ||||||||||| |||| |||| | |||||||||||    
T  10941889 gtttccttaattattaactagttacctccttggttcaacagattttact 10941841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Complemental strand, 18202606 - 18202572
Alignment:
Q  236 taactagttacatcctaggtttagcagattttact 270  Q
    |||||||||||||| ||||||||||||||||||||    
T  18202606 taactagttacatcataggtttagcagattttact 18202572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 6006593 - 6006657
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttcta 186  Q
    ||||| ||||||||||| ||||  ||| | |||||||||||||||||||| || ||||||||||||    
T  6006593 ggtagatctacaaacgggcagctctatcaacgtctaccttaccaagggtt-aggagaatggttcta 6006657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 8978417 - 8978368
Alignment:
Q  217 cgcttgtttccctaatctgtaactagttacatcctaggtttagcagattt 266  Q
    ||||||||||| ||||   ||||||||||||||||||||| |||||||||    
T  8978417 cgcttgtttccttaattactaactagttacatcctaggttcagcagattt 8978368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 3327063 - 3327027
Alignment:
Q  151 cgtctaccttaccaagggttaagaagaatggttctat 187  Q
    ||||||||||||||||||||||  |||||||||||||    
T  3327063 cgtctaccttaccaagggttaaagagaatggttctat 3327027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 18202710 - 18202666
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaag 166  Q
    ||||||||||||||||  |||| ||| ||||||||||||||||||    
T  18202710 gtagttctacaaacgggaagccctatcagcgtctaccttaccaag 18202666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 165 - 277
Target Start/End: Complemental strand, 20829298 - 20829186
Alignment:
Q  165 agggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgcttgtttccctaatctgtaactagttacatcctaggtttagcagat 264  Q
    ||||||||||||||||||||||||||| || || |||||||||| ||| || | ||||||||| |||||| ||||||||||| |||||||||| ||| ||    
T  20829298 agggttaagaagaatggttctattagggttcagattatttccttcaagcaacctcttgtttccttaatctctaactagttacctcctaggtttggcatat 20829199  T
Q  265 tttactaagtctt 277  Q
    |||||| ||||||    
T  20829198 tttactcagtctt 20829186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 20829427 - 20829338
Alignment:
Q  16 aaattggccttccagttttccttaaggctatgaagtgccaaagttccattaggttagaacatccatgaaacttaggtatctaaactcaca 105  Q
    |||||||||||| ||||| || || |||||||||||||||||||||||||||||||   |||||| ||| ||||||||||| ||||||||    
T  20829427 aaattggccttcaagtttcccctatggctatgaagtgccaaagttccattaggttaacccatccacgaatcttaggtatctcaactcaca 20829338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 9850944 - 9850871
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttg 195  Q
    ||||||||||||||||||| || ||| || |||||||||||||||||| ||| |||||||||||| ||||||||    
T  9850944 gtagttctacaaacggacaaccctatcagtgtctaccttaccaagggtcaaggagaatggttctactaggtttg 9850871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 17672582 - 17672654
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggttt 194  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||||||| |  ||||||||| ||||||||||    
T  17672582 gtagttctacaaacgggcagccctatcagcgtctaccttaccaagggtttatgagaatggttatattaggttt 17672654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 5956548 - 5956622
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttg 195  Q
    |||||||||||||| || ||||| ||||||||||||||||||||||| |  || |||||||||||| ||||||||    
T  5956548 ggtagttctacaaatgggcagccctattagcgtctaccttaccaaggatcgaggagaatggttctactaggtttg 5956622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 270
Target Start/End: Complemental strand, 24638963 - 24638816
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgctt 221  Q
    ||||||||||||||||| ||||| || |||||||||||||||||||||| |  |||||||||||| ||||    |  |||||||||| ||| |  | |||    
T  24638963 gtagttctacaaacgga-agcct-atcagcgtctaccttaccaagggtttaagagaatggttctactaggcaacaacttatttccttcaagcagacactt 24638866  T
Q  222 gtttccctaa-tctgtaactagttacatcctaggtttagcagattttact 270  Q
    |||||| ||| | | ||||||||||| ||||||||| |||| ||||||||    
T  24638865 gtttccttaattatttaactagttacctcctaggttcagcaaattttact 24638816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 11780934 - 11781004
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattagg 191  Q
    ||||||||||||||||| ||||| ||| |||||||| | ||||||||||| |  |||||||||||| ||||    
T  11780934 ggtagttctacaaacgggcagccctatcagcgtctaacataccaagggtttaagagaatggttctactagg 11781004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 19636048 - 19635982
Alignment:
Q  125 gttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattagg 191  Q
    ||||||||||||| ||||| ||| |||||||||||||| ||||||| |  |||||||||||| ||||    
T  19636048 gttctacaaacgggcagccatatcagcgtctaccttacaaagggtttaagagaatggttctactagg 19635982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 14572408 - 14572480
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtt 193  Q
    |||||||||||||||||  | || ||| || ||||||||||||||||||| || ||||||||| || ||||||    
T  14572408 ggtagttctacaaacgggaaaccctatcagtgtctaccttaccaagggtttaggagaatggttgtactaggtt 14572480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 8969236 - 8969162
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttg 195  Q
    |||||||||||||||| | ||   ||||| | |||||||||||||||||  || |||||||||||| ||||||||    
T  8969236 ggtagttctacaaacgaatagttctattaacatctaccttaccaagggtcgagcagaatggttctactaggtttg 8969162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 9053254 - 9053295
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttac 162  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||    
T  9053254 ggtagttctacaaacgggcagccctatcagcgtctaccttac 9053295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 19927930 - 19927897
Alignment:
Q  237 aactagttacatcctaggtttagcagattttact 270  Q
    |||||||||||||||||||| |||||||||||||    
T  19927930 aactagttacatcctaggttcagcagattttact 19927897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 25120732 - 25120687
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaagg 167  Q
    |||||||||||||||| ||||| ||| ||| |||||||||||||||    
T  25120732 gtagttctacaaacgggcagccctatcagcatctaccttaccaagg 25120687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 12839302 - 12839258
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaa 165  Q
    ||||||||||||||||| || || ||| |||||||||||||||||    
T  12839302 ggtagttctacaaacgggcatccctataagcgtctaccttaccaa 12839258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 19092991 - 19093043
Alignment:
Q  218 gcttgtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    |||||||||||||||   ||||||||||||||||| ||| | |||||||||||    
T  19092991 gcttgtttccctaattaataactagttacatcctatgttcaacagattttact 19093043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 19604972 - 19604932
Alignment:
Q  151 cgtctaccttaccaagggttaagaagaatggttctattagg 191  Q
    |||||||||||||||||||| |  |||||||||||||||||    
T  19604972 cgtctaccttaccaagggtttaagagaatggttctattagg 19604932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 270
Target Start/End: Original strand, 4340336 - 4340483
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgctt 221  Q
    ||||||||||||||||  | || ||| ||| |||||||||||||||||| |  ||||||||  ||||||| | || ||||||||||| ||||| || |||    
T  4340336 gtagttctacaaacgggaaaccctatcagcttctaccttaccaagggttcaagagaatggtcttattaggctcga-tttatttccttcaagaagtcactt 4340434  T
Q  222 gtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    |||| | |||| | | ||||||||||||||||||| |||||||||||||    
T  4340435 gttttcttaatttctcactagttacatcctaggttcagcagattttact 4340483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 1635578 - 1635626
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaagggtt 170  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||||||    
T  1635578 gtagttctacaaacggacaaccatatcagcgtctaccttaccaagggtt 1635626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 8245617 - 8245668
Alignment:
Q  219 cttgtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    ||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  8245617 cttgtttccctaattaaaaactagttacatcctaggtttagcagattttact 8245668  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 15466967 - 15467010
Alignment:
Q  125 gttctacaaacggacagccttattagcgtctaccttaccaaggg 168  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||    
T  15466967 gttctacaaacgggcagccctatcagcgtctaccttaccaaggg 15467010  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 18870802 - 18870869
Alignment:
Q  16 aaattggccttccagttttccttaaggctatgaagtgccaaagttccattaggttagaacatccatga 83  Q
    ||||||||||| || |||| | || || ||||||||||| |||||||||||||||||  |||||||||    
T  18870802 aaattggcctttcactttttcctagggttatgaagtgccgaagttccattaggttagcccatccatga 18870869  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 263
Target Start/End: Original strand, 18938426 - 18938566
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgctt 221  Q
    |||||||| ||||||  ||||| ||| | ||| ||||||||||||||| || |  ||||||| |||||| ||| ||||||||||||| ||   | |||||    
T  18938426 gtagttctgcaaacgtgcagccctatcaacgtgtaccttaccaagggtaaaaagtaatggttatattagtttttagtttatttccttcaa-ttagcgctt 18938524  T
Q  222 gtttccctaatctgtaactagttacatcctaggtttagcaga 263  Q
    ||||||||||||| ||||||| ||  ||||||||| ||||||    
T  18938525 gtttccctaatctctaactaggtatctcctaggttcagcaga 18938566  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 18831140 - 18831211
Alignment:
Q  199 ttatttcctttaagaaatcgcttgtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    |||||||||| |||||| | ||||||||| |||||| ||||||||||| ||||||| | |||||||||||||    
T  18831140 ttatttccttcaagaaacctcttgtttccttaatctctaactagttacctcctaggctcagcagattttact 18831211  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 19762780 - 19762720
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatgg 181  Q
    ||||||||| ||||||||||||| ||| |||||||||||||||||||   |||||||||||    
T  19762780 ggtagttctccaaacggacagccctatcagcgtctaccttaccaaggtgcaagaagaatgg 19762720  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 18207673 - 18207622
Alignment:
Q  219 cttgtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    ||||||||||||||   |||||||||||||| ||||||||||||||||||||    
T  18207673 cttgtttccctaattaataactagttacatcttaggtttagcagattttact 18207622  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 34488322 - 34488373
Alignment:
Q  219 cttgtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    ||||||||||||||   ||||||||||||||||||||| |||||||||||||    
T  34488322 cttgtttccctaattaataactagttacatcctaggttcagcagattttact 34488373  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 24264972 - 24264927
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaag 166  Q
    |||||||||||||||||||| || ||| ||||||||||||||||||    
T  24264972 ggtagttctacaaacggacatccctatcagcgtctaccttaccaag 24264927  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 24341603 - 24341558
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaag 166  Q
    |||||||||||||||||||| || ||| ||||||||||||||||||    
T  24341603 ggtagttctacaaacggacatccctatcagcgtctaccttaccaag 24341558  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 24661985 - 24661936
Alignment:
Q  221 tgtttccctaatctgtaactagttacatcctaggtttagcagattttact 270  Q
    ||||||||||||   |||||||||||||||||| ||||||||||||||||    
T  24661985 tgtttccctaattaataactagttacatcctagatttagcagattttact 24661936  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 25401837 - 25401792
Alignment:
Q  122 gtagttctacaaacggacagccttattagcgtctaccttaccaagg 167  Q
    ||||||||| |||||||||||| ||| |||||||||||||||||||    
T  25401837 gtagttctaaaaacggacagccctatcagcgtctaccttaccaagg 25401792  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 17171060 - 17171002
Alignment:
Q  123 tagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatgg 181  Q
    ||||||||||||| | ||||| ||| ||||||||||||||||||| || || |||||||    
T  17171060 tagttctacaaacaggcagccctatcagcgtctaccttaccaaggtttgaggagaatgg 17171002  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Complemental strand, 24266391 - 24266357
Alignment:
Q  236 taactagttacatcctaggtttagcagattttact 270  Q
    |||||||||||||||||||||||||| ||||||||    
T  24266391 taactagttacatcctaggtttagcatattttact 24266357  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Complemental strand, 24343022 - 24342988
Alignment:
Q  236 taactagttacatcctaggtttagcagattttact 270  Q
    |||||||||||||||||||||||||| ||||||||    
T  24343022 taactagttacatcctaggtttagcatattttact 24342988  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 26066717 - 26066763
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagg 167  Q
    ||||||||||||||||| ||||| ||| |||||||| ||||||||||    
T  26066717 ggtagttctacaaacgggcagccctatcagcgtctaacttaccaagg 26066763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 18938363 - 18938415
Alignment:
Q  53 ccaaagttccattaggttagaacatccatgaaacttaggtatctaaactcaca 105  Q
    |||| ||||||||||||||   |||||||||| ||||||||||| ||||||||    
T  18938363 ccaatgttccattaggttaatccatccatgaatcttaggtatctcaactcaca 18938415  T

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Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 270
Target Start/End: Original strand, 81224 - 81341
Alignment:
Q  153 tctaccttaccaagggttaagaagaatggttctattaggtttgagtttatttcctttaagaaatcgcttgtttccctaatctgtaactagttacatccta 252  Q
    ||||||||| |||||||| |  ||||||||| |||||||||  |  |||||||||| ||| || | ||||||||| ||||   ||||||||||| || ||    
T  81224 tctaccttatcaagggtttaagagaatggttttattaggttacaacttatttccttcaagcaaacacttgtttccttaattattaactagttacctcata 81323  T
Q  253 ggtttagcagattttact 270  Q
    | ||||||||||||||||    
T  81324 gatttagcagattttact 81341  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 244968 - 244896
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagggttaagaagaatggttctattaggtt 193  Q
    |||||||||||||||||  | || ||| || ||||||||||||||||||| || ||||||||| || ||||||    
T  244968 ggtagttctacaaacgggaaaccctatcagtgtctaccttaccaagggtttaggagaatggttgtactaggtt 244896  T

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Target: scaffold0128 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 103 - 57
Alignment:
Q  121 ggtagttctacaaacggacagccttattagcgtctaccttaccaagg 167  Q
    |||||||||||||||||  |||| |||||| ||||||||||||||||    
T  103 ggtagttctacaaacgggaagccctattagtgtctaccttaccaagg 57  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 55572 - 55605
Alignment:
Q  237 aactagttacatcctaggtttagcagattttact 270  Q
    |||||||||||||||||||| |||||||||||||    
T  55572 aactagttacatcctaggttcagcagattttact 55605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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