View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14813_low_19 (Length: 271)
Name: NF14813_low_19
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14813_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 46790577 - 46790333
Alignment:
| Q |
7 |
ctgcaatgaatctcattctctttttctcaatttctaaacataaactcactgttgttggtgctgatgctatgtacacaaaaccaatgacaagagattacat |
106 |
Q |
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| T |
46790577 |
ctgcaatgaatctcattctctttttctcaatttctaaacataaactcactgttgttggtgctgatgctatgtacacaaaaccaatgacgagagattacat |
46790478 |
T |
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| Q |
107 |
ttgcatatcaccaggacaaacaatggatgtattgttgcatgccaaccaagaacctagtcactactatatggctgcaagagcatattcaagtgaagcagga |
206 |
Q |
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| T |
46790477 |
ttgcatatcaccaggacaaacaatggatgtattgttacatgccaaccaagaacctagtcactactatatggctgcaagagcatattcaagtgcagcagga |
46790378 |
T |
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| Q |
207 |
ttagagtttgataatactacatccactggtatagtacaatacagt |
251 |
Q |
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| T |
46790377 |
ttagagtttgataataccacagccactggtatagtacaatacagt |
46790333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 46783135 - 46782889
Alignment:
| Q |
7 |
ctgcaatgaatctcattctctttttctcaatttctaaacataaactcactgttgttggtgctgatgctatgtacacaaaaccaatgacaagagattacat |
106 |
Q |
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| T |
46783135 |
ctgcaatgaatctcattctctttttctcaatttctaaacataaactcactgttgttggtgctgatgctatgtacacaaaaccaatgacgagagattacat |
46783036 |
T |
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| Q |
107 |
ttgcatatcaccaggacaaacaatggatgtattgttgcatgccaaccaagaacctagtcactactatatggctgcaagagcatattcaagtg---aagca |
203 |
Q |
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| T |
46783035 |
ttgcatatcaccaggacaaacaatggatgtattgttacatgccaaccaagaacctagtcactactatatggctgcaagagcatattcaactgataacgca |
46782936 |
T |
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| Q |
204 |
ggattagagtttgataatactacatccactggtatagtacaatacag |
250 |
Q |
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| T |
46782935 |
agagtagagtttgataacaccacaaccactgctatagtgcaatacag |
46782889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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