View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14813_low_2 (Length: 667)
Name: NF14813_low_2
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14813_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 34953184 - 34953610
Alignment:
| Q |
18 |
gaccctaggcttttattaaaagttgttaacgttggtcatcgtcaaagttttgagtaatttttaagcgtcggtccaccgtagactatatgagacacttctt |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
34953184 |
gaccctaggcttttattaaaagttgttgacgttggtcatcgtcaaagttttgagtaatttttaagcgtcggcccaccgtagactatatgaaacacttctt |
34953283 |
T |
|
| Q |
118 |
ttccttagcaatcatccaatagtgtattactaatccaaagctgaa--tgtgcactcacattattttcaatttacacatgataaattgcagtgttcaatta |
215 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34953284 |
ttccttagcaatcattcaatagtgtattactaatccaaagctgaaattgtgcactcacattattttcaatttacacatgacaaattgcagtgttcaatta |
34953383 |
T |
|
| Q |
216 |
ccaatctggccaagactcagtaattcaagtaactagccaacaagactatgagaattgcaacactgatgcatcatctgaaatatcctctgatggccacaca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34953384 |
ccaatctggccaagactcagtaattcaagtaactagccaacaagactatgagaattgcaacactgatgcatcatctgaaaaatcctctgatggccacaca |
34953483 |
T |
|
| Q |
316 |
ataatcaagctcattaaatcaggtcctcactacttcataagtggaaacaaaaataactgtctccagaatgagaaactgttggtgattgttcttgctgata |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34953484 |
gtaatcaagctcattaaatcaggtcctcactacttcataagtggaaacaaaaataactgtctccagaatgagaaactgttggtgattgttcttgctgata |
34953583 |
T |
|
| Q |
416 |
gaaccaacaaaaactcaaaccaaacaa |
442 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
34953584 |
gaaccaacaaaaactcaaaccaaacaa |
34953610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 498 - 655
Target Start/End: Original strand, 34953666 - 34953823
Alignment:
| Q |
498 |
acactcatcggatgcattaactcctataccgccaccttctccactaaacggttcatctacaccaccttctccagtactagatggttcatctccaccacct |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34953666 |
acactcatcggatgcattaactcctataccgccaccttctccactaaacggttcatctacaccaccttctccagtactagatggttcatctccaccacct |
34953765 |
T |
|
| Q |
598 |
tctccacttgatggttcaactcttactccaccacctgttcagcaagtcggttcatctc |
655 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34953766 |
tctccgcttgatggttcaactcttactccaccacctgttcagcaagtcggttcatctc |
34953823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 332 - 390
Target Start/End: Complemental strand, 31394390 - 31394332
Alignment:
| Q |
332 |
aatcaggtcctcactacttcataagtggaaacaaaaataactgtctccagaatgagaaa |
390 |
Q |
| |
|
||||||| ||||| | |||||| |||||||||||| ||||||||||| | ||||||||| |
|
|
| T |
31394390 |
aatcagggcctcatttcttcatcagtggaaacaaagataactgtctcaaaaatgagaaa |
31394332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University