View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14813_low_22 (Length: 258)

Name: NF14813_low_22

Description: NF14813

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14813_low_22

[»] chr2 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 158; E-Value: 4e-84

Query Start/End: Original strand, 36 - 205

Target Start/End: Complemental strand, 14999688 - 14999520

Alignment:

Q	36	agattgtagttcaatatgttccaagtattgtaaaaagaaaaagaagaggtttttcatgcccaccattgagcttacagtaaattgttacccgcatgtccaa	135	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	14999688	agattgtagttcaatatgttccaagtattgtaaaaagaaaaagaagaggtttttcatgcccaccattgagcttacagtaaattgttaccagcatgtccaa	14999589	T

Q	136	cctaaaaagtttgagcatcaacctcattcaaaacttaaaaaactacattatttgttgcacagctgaatca	205	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	14999588	cctaaaaagtttgagcatcaacctcattcaaaac-taaaaaactacattatttgttgcacagctgaatca	14999520	T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 39; E-Value: 0.0000000000004

Query Start/End: Original strand, 121 - 212

Target Start/End: Complemental strand, 29468464 - 29468372

Alignment:

Q	121	tacccgcatgtccaacctaaaaagttt--gagcatcaacctcattcaaaacttaaaaaactacattatttgttgcacagctgaatcacaaagta	212	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29468464	taccggcatgtccaacctataaagtttttgagcatcaacctcgaccaaaact-aaaacactaccttatttctcgcacagctgaatcacaaagta	29468372	T

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