View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14813_low_27 (Length: 244)
Name: NF14813_low_27
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14813_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 38360203 - 38360437
Alignment:
| Q |
1 |
tcacttatatctgctaattcatcaatcacagacttttctatccttaaattctttgaagttagaattaatcctcccaagccaagaatcaccaaagaagttt |
100 |
Q |
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| T |
38360203 |
tcacttctatctgctaattcatcaatcacagacttttctatccttaaattctttgaagttagaattaatcctccaaagccaagaatcaccaaagaagttt |
38360302 |
T |
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| Q |
101 |
tatggtcaccccgtattcttgattgtgttaaatgtaacactaatggagcttcaattggaaaccctggtgatgc-aacctatggtggaatttttaggaatg |
199 |
Q |
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| T |
38360303 |
tacggtcaccccctattcttgattgtgttaaatgtaacactaatggagcttcaattggaaaccctggtgatgcaaacctatggtggaatttttaggaatt |
38360402 |
T |
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| Q |
200 |
ctaatgttgaattcttgggagctttctcaatcaat |
234 |
Q |
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| T |
38360403 |
ctaatgttgaattcttgggagctttctcaatcaat |
38360437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 18525415 - 18525261
Alignment:
| Q |
14 |
ctaattcatcaatcacagacttttctatccttaaattctttgaagttagaattaatcctcccaagccaagaatcaccaaagaagttttatggtcaccccg |
113 |
Q |
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| T |
18525415 |
ctaactcatcaatcactgacttctccatccttaaatcatttgatgttagaattaatctctcaaagccaactatcagtaaagaggttcgttggtcccctcc |
18525316 |
T |
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| Q |
114 |
tattcttgattgtgttaaatgtaacactaatggagcttcaattggaaaccctggt |
168 |
Q |
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| T |
18525315 |
aattcttgattgtattaaatacaacactgatggagcatctattggcaaccctggt |
18525261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 6162838 - 6162721
Alignment:
| Q |
29 |
cagacttttctatccttaaattctttgaagttagaattaatcctcccaagccaagaatcaccaaagaagttttatggtcaccccgtattcttgattgtgt |
128 |
Q |
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|||| ||||||||||| |||| ||| ||||||||||||||||| ||||| |||||||| || || ||||||||| |||| | || | ||||||| |
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| T |
6162838 |
cagatttttctatcctcaaatcttttactgttagaattaatcctccaaagcctagaatcacaaaggaggttttatggctgccccctgttttgaattgtgt |
6162739 |
T |
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| Q |
129 |
taaatgtaacactaatgg |
146 |
Q |
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| T |
6162738 |
caaatgtaacactgatgg |
6162721 |
T |
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