View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14813_low_29 (Length: 239)
Name: NF14813_low_29
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14813_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 44180309 - 44180504
Alignment:
| Q |
1 |
ccttagatgaatatatgtataccaaccatattagtcacaacatgtgcgaaaaagatatttagagttgattgttcattgtttactagaggaggagatatca |
100 |
Q |
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| T |
44180309 |
ccttagatgaatatatgtataccaaccatattagtcacaacatgtgcgaaaaagatatttagagttgattgttcattgtttaccagaggaggagatatca |
44180408 |
T |
|
| Q |
101 |
ccgatggtggtggcgttaaggtagccgtaacaaatgttcacgggaaagcttaccaaaagataaaatctatcaaagaaaactttttaaatcgaaggg |
196 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44180409 |
acgatggtggtggtgttaaggtagccgtaacaaatgttcacgggaaagcttaccaaaagataaaatctatcaaagaaaactttttaaatccaaggg |
44180504 |
T |
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