View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14813_low_5 (Length: 605)
Name: NF14813_low_5
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14813_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 17 - 590
Target Start/End: Complemental strand, 46034701 - 46034127
Alignment:
| Q |
17 |
tcatgcatctcatcagactcaaaaaacagattacaagctaagttaaactcatcagccataatagatacattttgggcggcacacaccacattaagtagtc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
46034701 |
tcatgcatctcatcagactcaaaaaacagattacaagctaagttaaactcatcagccataatagagacattttgggcggcacacaccacattaagtggtc |
46034602 |
T |
|
| Q |
117 |
gcttgttgaacactgcgtcattccgcattttccagatggtccatagagatagactaaagagttgagt-gcttgggcattagaattagataaccatttcat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46034601 |
gcttgttgaacactgcgtcattccgcattttccagatggtccatagagatagactaaagagttgagtagcttgggcattagaattagataaccatttcat |
46034502 |
T |
|
| Q |
216 |
catccattgagttaagttaacctgtgttggaacatgtaattcgagcggagatgtaaaccagaacctttgagtttcttgacagtgcatgaagaggtggtct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46034501 |
catccattgagttaagttaacctgtgttggaacatgtaatccgagcggagatgtaaaccagaacctttgagtttcttgacagtgcatgaagaggtggtct |
46034402 |
T |
|
| Q |
316 |
tgggattcctcgtcgatatggcagaacgggcagctagtgtctagagtaattccttttgtctccagcttacatctagttggtaagatacatttagcagctc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46034401 |
tgggattcctcgtcgatatggcagaacgggcagctagtgtctagagtaattccttttgtctccagcttacatctagttggtaagatacatttagcagctc |
46034302 |
T |
|
| Q |
416 |
tccataagaaattcctgaccctttgaggagttctaactttccaaatggccttccacataccggtgttacacattactgatgcttcaggggtgcctcgtaa |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46034301 |
tccataagaaattcctgaccctttgaggagttctaactttccaaatggccttctacataccggtgttacacgttactgatgcttcaggggtgcctcgtaa |
46034202 |
T |
|
| Q |
516 |
tgtctcttccttgagcagatggtatgctgatcgaacggagtattgaccattcctttcccaattccaaaccttctt |
590 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46034201 |
tgtctcttccttgagcagatggtatgctgatcgaacggagtattgaccattcctttcccaattccaaaccttctt |
46034127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 17 - 590
Target Start/End: Complemental strand, 39488579 - 39488005
Alignment:
| Q |
17 |
tcatgcatctcatcagactcaaaaaacagattacaagctaagttaaactcatcagccataatagatacattttgggcggcacacaccacattaagtagtc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
39488579 |
tcatgcatctcatcagactcaaaaaacagattacaagctaagttaaactcatcagccataatagagacattttgggcggcacacaccacattaagtggtc |
39488480 |
T |
|
| Q |
117 |
gcttgttgaacactgcgtcattccgcattttccagatggtccatagagatagactaaagagttgagt-gcttgggcattagaattagataaccatttcat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39488479 |
gcttgttgaacactgcgtcattccgcattttccagatggtccatagaaatagactaaagagttgagtagcttgggcattagaattagataaccatttcat |
39488380 |
T |
|
| Q |
216 |
catccattgagttaagttaacctgtgttggaacatgtaattcgagcggagatgtaaaccagaacctttgagtttcttgacagtgcatgaagaggtggtct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39488379 |
catccattgagttaagttaacctgtgttggaacatgtaatccgagcggagatgtaaaccagaacctttgagtttcttgacagtgcatgaagaggtggtct |
39488280 |
T |
|
| Q |
316 |
tgggattcctcgtcgatatggcagaacgggcagctagtgtctagagtaattccttttgtctccagcttacatctagttggtaagatacatttagcagctc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39488279 |
tgggattcctcgtcgatatggcagaacgggcagctagtgtctagagtaattccttttgtctccagcttacatctagttggtaagatacatttagcagctc |
39488180 |
T |
|
| Q |
416 |
tccataagaaattcctgaccctttgaggagttctaactttccaaatggccttccacataccggtgttacacattactgatgcttcaggggtgcctcgtaa |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
39488179 |
tccataagaaattcctgaccctttgaggagttctaactttccaaatggccttccacataccggtgttacacgttactgatacttcaggggtgcctcgtaa |
39488080 |
T |
|
| Q |
516 |
tgtctcttccttgagcagatggtatgctgatcgaacggagtattgaccattcctttcccaattccaaaccttctt |
590 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39488079 |
tgtctcttccttgagtagatggtatgctgatcgaacggagtattgaccattcctttcccaattccaaaccttctt |
39488005 |
T |
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