View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14813_low_6 (Length: 549)
Name: NF14813_low_6
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14813_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 10 - 531
Target Start/End: Original strand, 38184283 - 38184804
Alignment:
| Q |
10 |
acatcatcaggaacagttggtgtagagtcaaacagagatgaaacaattgacaaagtaccaggaagttgactgttaaaagcagaaatcacagaagcagctt |
109 |
Q |
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| T |
38184283 |
acatcatcaggaacagttggtgtagagtcaaacagagatgaaacaattgacaaagtaccaggaagttgactattaaaagcagaaatcacagaagcagctt |
38184382 |
T |
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| Q |
110 |
tatccccattattcttctgataatgcaccaatccttttgggaacacaaagatttcaccnnnnnnnatggacttagaaatgagtttgtttgatgtggtgat |
209 |
Q |
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| T |
38184383 |
tatccccattattcttctgataatgcaccaatccttttgggaacacaaagatttcacctttttttatggacttagaaatgagtttgtttgatgtggtgat |
38184482 |
T |
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| Q |
210 |
aaaacctacatctaattcaccttccaacacaaaaacaacctcagtggcacgagggtgtgtgtgtggtgggttaagacctttaggtttgtagtctattctt |
309 |
Q |
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| T |
38184483 |
aaaacctacatctaattcaccttccaacacaaaaacaacctcagtggcacgagggtgtgtgtgtggtgggttaagacctttaggtttgtagtctattctt |
38184582 |
T |
|
| Q |
310 |
gataaagacacccctaatgtgttgagtcctggaattttgtcaacatttgctgctgtaaccaaagatcctactgtgttgttgacaactttagggtttgcta |
409 |
Q |
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| T |
38184583 |
gataaagacacccctaatgtgttgagtcctggaattttgtcaacatttgctgcagtaaccaaagatcctactgtgttgttgacaactttagggtttgcta |
38184682 |
T |
|
| Q |
410 |
aaccatcaaagaagaaatcaactgctgttacatttgactcttccttgcacgcaaatccattcaccttaacacctacataatacgtaccatatatgttgag |
509 |
Q |
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| T |
38184683 |
aaccatcaaagaagaaatcaactgctgttacatttgactcttccttgcaagcaaatccattcaccttaacacctacataatacataccatatatgttgag |
38184782 |
T |
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| Q |
510 |
ctttcatagacataactctgct |
531 |
Q |
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| T |
38184783 |
ctttcatagacataactctgct |
38184804 |
T |
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