View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14813_low_7 (Length: 537)
Name: NF14813_low_7
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14813_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 19 - 527
Target Start/End: Complemental strand, 34768628 - 34768120
Alignment:
| Q |
19 |
atcttagcaatagaagaattttttccttataagttctaagtgtattccttcgccactaaccttacattgtatcgatcaagaatgacatcttattgacttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34768628 |
atcttagcaatagaagaattttttccttataagttctaagtgtattccttcgccactaaccttacattgtatcgatcaagaatgacatcttattgacttt |
34768529 |
T |
|
| Q |
119 |
gaatgtgtagatccactcaactaataggttttaatgcccctagcctctcaaaaatctccaagtttcattcttttttcaagtgctcttgtctcatcatcta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34768528 |
gaatgtgtagatccactcaactaataggttttaatgcccctagcctctcaaaaatctccaagttccattcttttttcaagtgctcttgtctcatcatcta |
34768429 |
T |
|
| Q |
219 |
tagcattttttagtggaaaacaatgtccatatctttaacttggactcaatatatattctcgagtaagctaagtattcaacatatattgaaattttcactg |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34768428 |
tagcattttttagtgggaaacaatgtccatatctttaacttggactcaatatatattctcgagtaagctaagtattcaacatatattgaaattttcactg |
34768329 |
T |
|
| Q |
319 |
agtcaataaatatagtaaaactctgatattgcgtaaaaaagttatataaagaagacaaatttagaaataaagaaacatgtcataaaactgggctaggtta |
418 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34768328 |
agtcaataaatatagtaaaactttgatattgcgtaaaaaagttgtataaagaagacaaatttagaaataaagaaacatgtcataaaactgggctaggtta |
34768229 |
T |
|
| Q |
419 |
aatatgagaataattacaaataaataaattattttaaataaattcctgtagtcaataactaaatacgattaaagttggtttggattgggtttcatctttc |
518 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34768228 |
aatatgagaataataacaaataaataaattattttaaataaattcctgtagtcaataactaaatacgattaaagttggtttggactgggtttcatctttc |
34768129 |
T |
|
| Q |
519 |
tctcctttg |
527 |
Q |
| |
|
||||||||| |
|
|
| T |
34768128 |
tctcctttg |
34768120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University