View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14813_low_8 (Length: 488)
Name: NF14813_low_8
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14813_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 4947732 - 4948231
Alignment:
| Q |
1 |
gcttttatttctcggacccaaagagtagacatnnnnnnnctcgggattaaattgttccattttctttactcagaaactaaaaattgtttttattgatcat |
100 |
Q |
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|||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4947732 |
gcttttatttctcggacccaaagaatagacataaaaaaactagggattaaattgttccattttcttttctcagaaactaaaaattgtttttattgatcat |
4947831 |
T |
|
| Q |
101 |
tttctatgatcaaatta-----------ggtatctaannnnnnnnataatttaaattttatagttgtgag-------------taatgttctacttacac |
176 |
Q |
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||||||||||||||||| || ||| || ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4947832 |
tttctatgatcaaattagggatcaactcgggatcaaaaaaaatttataatttaaattttatagttgtgagtaatgtttgtgagtaatgttctacttacac |
4947931 |
T |
|
| Q |
177 |
tgggtgcaactaattttactaattagtgaataaacacacacatgcaagcttaacctagataagttaaacctgaatatcaattgcaatatttatattgtac |
276 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4947932 |
tgggtgcaactaattttactaattagtgaataaacacacacatgcaagcttaacctagataagttaaacctgaatatcaattgcaatatttatattgtac |
4948031 |
T |
|
| Q |
277 |
taagcattgaattaatgtattcaatattatggtatgtgcagatggacaaagcttctgtgttgggagatgctaccaagtacatgaaacaactacaggcacg |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4948032 |
taagcattgaattaatgtattcaatattatggtatgtgcagatggacaaagcttctgtgttgggagatgctaccaagtacatgaaacaactacaggcacg |
4948131 |
T |
|
| Q |
377 |
tttgcagacactggaggaacaagctgaagacaacaaaaaagctggatccacagtccaagtgaagagatctattatcttcactaataataatgatgatgat |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4948132 |
tttgcagacactggaggaacaagctgaagacaacaaaaaagctggatccacagtccaagtgaagagatctattatcttcactaataataatgatgatgat |
4948231 |
T |
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