View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14813_low_9 (Length: 482)
Name: NF14813_low_9
Description: NF14813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14813_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 16 - 468
Target Start/End: Original strand, 34247963 - 34248415
Alignment:
| Q |
16 |
atgaatccgagagaattgttaagcttgctccttttggaatccgatttactagttgtctgaagtccaaatctatacagtatacgacaatgatagaaataaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34247963 |
atgaatccgagagaattgttaagcttgctccttttggaatccgatttactagttgtctgaagtccaaatctatacagtatacgacaatgatagaaataaa |
34248062 |
T |
|
| Q |
116 |
agtattagttttatacatagtttctaaatggcatttgggttgtcacatagttcaaatatctaagaaaattctatagttcacatagactactctgcaattt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34248063 |
agtattagttttatacatagtttctaaatggcatttgggttgtcacatagttcaaatatctaagaaaattctatagttcacatagactactctgcaattt |
34248162 |
T |
|
| Q |
216 |
taaatgtgannnnnnnncatatgaacttgagctagtaacatcataaacaattttgtaactaaatcgcgacataagttttatcacgagagaagttgataca |
315 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34248163 |
taaatgtgattttttttcatatgaactcgagctagtaacatcataaacaattttgtaactaaatcgcgacataagttttatcaagagagaagttgataca |
34248262 |
T |
|
| Q |
316 |
aaccagtgataagattgaagtcacaaggcacaatagcttcttcatgtcgaaaaggatgtccatgtatcttggaaggaatcctagttccatgtccactata |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34248263 |
aaccagtgataagattgaagtcacaaggcacaatagcttcttcatgtcgaaaaggatgtccatgtatcttggaaggaatcctagttccatgtccactata |
34248362 |
T |
|
| Q |
416 |
atgaaaataaagcacatcccctgcttcagctttatcaaccatgcttgataatg |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34248363 |
atgaaaataaagcacatcccctgcttcagctttatcaaccatgcttgataatg |
34248415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University