View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14814_high_3 (Length: 447)
Name: NF14814_high_3
Description: NF14814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14814_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 34069759 - 34070120
Alignment:
| Q |
1 |
attgtctggggatatatgaacataggttcggaaaattaaagaatcataagcttaatgtttaaataaattcgaatgcaagtata--cacacagccaagaaa |
98 |
Q |
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| T |
34069759 |
attgtctgaagatatatgaacataggttcggaaaattaaagaatcataagcttaatgtttaaacaaattcgaatgcaagtatatacacacagccaagaaa |
34069858 |
T |
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| Q |
99 |
tccctatgtacccaaatataatcattcatttgattaaaaatttatccttaaatacaagtttattttcaaacaattaagtgtcttaaaataggaaaagtca |
198 |
Q |
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| T |
34069859 |
tccctatgtacccaaatataatcattcatttgattaaaaatctatccttaaatacaagtttattttcaaacaattaagtgtcttaaaataggaaaagtca |
34069958 |
T |
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| Q |
199 |
aaacttactgcatacatgcacaaaagatattttagatatatgaactgcactacatcnnnnnnnaataacagtgaaaaatacaaaaggtgtttatgctaac |
298 |
Q |
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| T |
34069959 |
aaacttactgcatacatgcacaaaagatattttagatatatgaactgcactacttctttttttaataacagtgaaaaatacaaaaggtgtttatgctaac |
34070058 |
T |
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| Q |
299 |
at--------atacaacccttagagtaattaggacttggaccatgcaatgac-ttaattgtt |
351 |
Q |
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| T |
34070059 |
atatgccttaatacaacccttggagtaattaggacttggaccatgcaatgacattaattgtt |
34070120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 350 - 434
Target Start/End: Original strand, 34070162 - 34070246
Alignment:
| Q |
350 |
ttgatctatgataaatctttataatcatttcttatgcaggtttgtgctgttttcatgcatgcagtattgttaactatgatagatg |
434 |
Q |
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| T |
34070162 |
ttgatctatgataactctttataatcatttcttatgcaggtttgtgctgttttcatgcatgcagtattgttaactatgatagatg |
34070246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 26186300 - 26186340
Alignment:
| Q |
114 |
atataatcattcatttgattaaaaatttatccttaaataca |
154 |
Q |
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| T |
26186300 |
atataagcatttatttgattaaaaatttgtccttaaataca |
26186340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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