View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14814_high_4 (Length: 318)
Name: NF14814_high_4
Description: NF14814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14814_high_4 |
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| [»] scaffold0134 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 9603151 - 9603436
Alignment:
| Q |
17 |
cctgtgtagatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaaattt |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9603151 |
cctgtgtagatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaaattt |
9603250 |
T |
|
| Q |
117 |
aaaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtcttgaccaagtttgaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9603251 |
aaaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtcttgaccaagtttgaaa |
9603350 |
T |
|
| Q |
217 |
tcccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaattaaacaagagattgttgcagaatgtgttcataaaact |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9603351 |
tcccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaattaaataagagattgttgcagaatgtgttcataaaact |
9603436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 9594350 - 9594627
Alignment:
| Q |
19 |
tgtgtagatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaaattta- |
117 |
Q |
| |
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|||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9594350 |
tgtgtagatgggttccacaatacagtgtttccataataataatcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaaattttt |
9594449 |
T |
|
| Q |
118 |
--aaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtcttgaccaagtttgaa |
215 |
Q |
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||||||||||||| ||| ||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
9594450 |
tgaaacggtttgcat---atggatttgagaaatctaatttaacattgttctcaaacctttcaccagaaatagaatagaaaacgtctttaccaagttcgaa |
9594546 |
T |
|
| Q |
216 |
atcccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaattaaacaagagattgttgcagaatgtgttcat |
296 |
Q |
| |
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|||| |||| || |||||| ||||||||||||||||||||| ||||||||| | ||||||||||||| ||| ||||||| |
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| T |
9594547 |
atcctttagaagcagagatcccccgtcgtaataaggacatcggtgagaattagataagagattgttgcggaacatgttcat |
9594627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 25 - 296
Target Start/End: Original strand, 9582563 - 9582831
Alignment:
| Q |
25 |
gatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaaatttaaaacggt |
124 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
9582563 |
gatgggttccacaatagagttttgccataataataatcttgatagagacaaaatgtgccattaatactaccaaagccaaaaatacgaaatttgaaacggt |
9582662 |
T |
|
| Q |
125 |
ttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtcttgaccaagtttgaaatcccttag |
224 |
Q |
| |
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||||| ||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
9582663 |
ctgcat---atgcatttgagaaatctaattgaactttgttctcaaacctttcaccagaaatagaatagaaaacgtctttaccaagttcgaaatcccttag |
9582759 |
T |
|
| Q |
225 |
gaggagagatgtcccgtcgtaataaggacatcgatgagaattaaacaagagattgttgcagaatgtgttcat |
296 |
Q |
| |
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||| |||||| ||| ||||||||||||||| | ||||||||| | || ||||| ||| |||| ||||||| |
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| T |
9582760 |
gagcagagatcccccatcgtaataaggacattggtgagaattagataaaagattcttgtagaacatgttcat |
9582831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 25 - 296
Target Start/End: Original strand, 9588258 - 9588526
Alignment:
| Q |
25 |
gatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaaatttaaaacggt |
124 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
9588258 |
gatgggttccacaatagagttttgccataataataatcttgatagagacaaaatgtgccattaatactaccaaagccaaaaatacgaaatttgaaacggt |
9588357 |
T |
|
| Q |
125 |
ttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtcttgaccaagtttgaaatcccttag |
224 |
Q |
| |
|
||||| ||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
9588358 |
ctgcat---atgcatttgagaaatctaattgaactttgttctcaaacctttcaccagaaatagaatagaaaacgtctttaccaagttcgaaatcccttag |
9588454 |
T |
|
| Q |
225 |
gaggagagatgtcccgtcgtaataaggacatcgatgagaattaaacaagagattgttgcagaatgtgttcat |
296 |
Q |
| |
|
||| |||||| ||| ||||||||||||||| | ||||||||| | || ||||| ||| |||| ||||||| |
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| T |
9588455 |
gagcagagatcccccatcgtaataaggacattggtgagaattagataaaagattcttgtagaacatgttcat |
9588526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 9568689 - 9568415
Alignment:
| Q |
19 |
tgtgtagatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaaatttaa |
118 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| || ||||| | |||||| |||||||| ||| |||||||||||||||||||||||||||||||| || | |
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| T |
9568689 |
tgtgtagatgggttccacaatagagttttgccattataatcatcttgatggagacaaagtgtgccattaatactaccaaaaccaaaaatacgaaaattga |
9568590 |
T |
|
| Q |
119 |
aacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtcttgaccaagtttgaaatc |
218 |
Q |
| |
|
||||||||| || ||| ||||| |||||||| || |||||||||||||||||||||||| |||||||||||||||| |||| |||||||| ||||| |
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|
| T |
9568589 |
aacggtttg---caaatggatttgtgaaatctaattgtactttgttctcaaacctttcaccataaatagaatagaaaacttctttaccaagttctaaatc |
9568493 |
T |
|
| Q |
219 |
ccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaattaaacaagagattgttgcagaatgtgttcat |
296 |
Q |
| |
|
| |||| || ||||||| || |||||||||||| ||| ||||||||| | || ||||| ||| |||| ||||||| |
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|
| T |
9568492 |
ctttagaagaagagatgctccatcgtaataaggatatctgtgagaattagataaaagattcttgtagaacatgttcat |
9568415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 257
Target Start/End: Complemental strand, 9573816 - 9573586
Alignment:
| Q |
25 |
gatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaaatttaaaacggt |
124 |
Q |
| |
|
|||||||||||| ||| ||| |||| ||||||| | |||||| |||||||||||| |||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
9573816 |
gatgggttccacgatagagttttgccataataaccaccttgatggagacaaaatgtgccattaatactaccaaaaccaaaaatacgaaacttgaaacggt |
9573717 |
T |
|
| Q |
125 |
ttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtcttgaccaagtttgaaatcccttag |
224 |
Q |
| |
|
||| ||| || ||||| |||||||| || | |||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |||||| |||| |
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|
| T |
9573716 |
ttg---catgtggatttgagaaatctaactttaatttgatctcaaacctttcaccataaatagaatagaaaacgtctttaccaagttcaaaatcctttag |
9573620 |
T |
|
| Q |
225 |
gaggagagatgtcccgtcgtaa-taaggacatcg |
257 |
Q |
| |
|
||| | ||||| ||| |||||| ||||||||||| |
|
|
| T |
9573619 |
gagcaaagatgccccatcgtaattaaggacatcg |
9573586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 274
Target Start/End: Original strand, 54295670 - 54295919
Alignment:
| Q |
22 |
gtagatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaaatttaaaac |
121 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||||||| | | | || |||||||| | | ||||||| |||||||||||||| |||| ||| | | || |
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|
| T |
54295670 |
gtagatggattccacaatacagttttgccataataatcatcctcatggagacaaattatgccattaacactaccaaaaccaagaataacaaaatcacaat |
54295769 |
T |
|
| Q |
122 |
ggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtcttgaccaagtttgaaatccct |
221 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||||||||| || | ||||||||||||| |||| ||||||||| ||| || ||| | || |||||||| |
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|
| T |
54295770 |
ggtttgcaa---atggatttgggaaatctaatttaactttattttgaaacctttcaccaaaaatggaatagaaatcgtttttaccgaattcaaaatccct |
54295866 |
T |
|
| Q |
222 |
taggaggagagatgtcccgtcgtaataaggacatcgatgagaattaaacaaga |
274 |
Q |
| |
|
||| || | ||| | |||| |||||||| | | || ||||||||||| |||| |
|
|
| T |
54295867 |
tagaagtaaagaagatccgttgtaataagaaaagcggtgagaattaaataaga |
54295919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 42445785 - 42445694
Alignment:
| Q |
22 |
gtagatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaaa |
113 |
Q |
| |
|
|||||||| |||||||||||| | |||| ||||| || | || || |||||| | ||| |||||||||||||||||||||||||||||||| |
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|
| T |
42445785 |
gtagatggattccacaatacaattttgccataattatcatattcatggagacagagtgtgccattaatactaccaaaaccaaaaatacgaaa |
42445694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 29144704 - 29144657
Alignment:
| Q |
66 |
atagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaaa |
113 |
Q |
| |
|
||||||||||| | | |||||||||||||||||||||||||||||||| |
|
|
| T |
29144704 |
atagagacaaagtataccattaatactaccaaaaccaaaaatacgaaa |
29144657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 29012306 - 29012262
Alignment:
| Q |
66 |
atagagacaaaatgtcccattaatactaccaaaaccaaaaatacg |
110 |
Q |
| |
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||||||||||| ||| || |||||||||||||||||||||||||| |
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|
| T |
29012306 |
atagagacaaagtgtgccgttaatactaccaaaaccaaaaatacg |
29012262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 29130730 - 29130682
Alignment:
| Q |
64 |
tgatagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaa |
112 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
29130730 |
tgatggagacaaaatgtgccattaatactaccgaaaccaaagatacgaa |
29130682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 34279157 - 34279195
Alignment:
| Q |
70 |
agacaaaatgtcccattaatactaccaaaaccaaaaata |
108 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
34279157 |
agacaaagtgtcccattaatactaccaaaacccaaaata |
34279195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 16957 - 17017
Alignment:
| Q |
131 |
catatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaata |
191 |
Q |
| |
|
|||||| ||||| |||||||| ||| || || ||||||||||| |||||||||| |||||| |
|
|
| T |
16957 |
catatggatttgagaaatctaatttgaccttattctcaaacctctcaccagaaagagaata |
17017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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