View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14814_low_4 (Length: 437)

Name: NF14814_low_4
Description: NF14814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14814_low_4
NF14814_low_4
[»] chr3 (5 HSPs)
chr3 (14-437)||(42232390-42232813)
chr3 (45-120)||(42232755-42232830)
chr3 (405-437)||(42232279-42232311)
chr3 (100-130)||(42232889-42232919)
chr3 (159-189)||(42232899-42232929)
[»] chr8 (4 HSPs)
chr8 (49-437)||(28945882-28946273)
chr8 (387-437)||(28946334-28946384)
chr8 (45-129)||(28945830-28945914)
chr8 (49-129)||(28945786-28945866)
[»] chr4 (4 HSPs)
chr4 (27-437)||(34823223-34823636)
chr4 (387-437)||(34823697-34823747)
chr4 (43-129)||(34823143-34823229)
chr4 (45-129)||(34823193-34823277)


Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 14 - 437
Target Start/End: Complemental strand, 42232813 - 42232390
Alignment:
Q  14 catcatcaacgcgctcttctgttaacttgttcttttctttatcttctccatcaccaacatgctcttctggtaacttgtcctttttattaccatctccatc 113  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42232813 catcatcaacgtgctcttctgttaacttgttcttttctttatcttctccatcaccaacatgcccttctggtaacttgtcctttttattaccatctccatc 42232714  T
Q  114 accaacacactcttcctccaatttctctgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctctcccagcaatttcctcttc 213  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  42232713 accaacacactcttcctccaatttctccgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctcttcccgcaatttcctcttc 42232614  T
Q  214 cccttagcaccacccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttcc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42232613 cccttagcaccacccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttcc 42232514  T
Q  314 ttgttatcctcacattcctcggctccttcacaccatcgaaatccccaacactcaattcaaaagtccccattttattcatcttattcctcatattccttgt 413  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  42232513 ttgtcatcctcacattcctcggctccttcacaccatcgaaatccccaacactcaattcagaagtccccattttattcatcttattcctcaaattccttgt 42232414  T
Q  414 caccctcacattcttcttcacttc 437  Q
    ||||||||||||||||||||||||    
T  42232413 caccctcacattcttcttcacttc 42232390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 42232830 - 42232755
Alignment:
Q  45 cttttctttatcttctccatcaccaacatgctcttctggtaacttgtcctttttattaccatctccatcaccaaca 120  Q
    ||||| |||||||||||||||| |||| |||||||||| |||||||| |||||  ||| | |||||||||||||||    
T  42232830 cttttttttatcttctccatcatcaacgtgctcttctgttaacttgttcttttctttatcttctccatcaccaaca 42232755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 405 - 437
Target Start/End: Complemental strand, 42232311 - 42232279
Alignment:
Q  405 attccttgtcaccctcacattcttcttcacttc 437  Q
    |||||||||||||||||||||||||||||||||    
T  42232311 attccttgtcaccctcacattcttcttcacttc 42232279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 130
Target Start/End: Complemental strand, 42232919 - 42232889
Alignment:
Q  100 ttaccatctccatcaccaacacactcttcct 130  Q
    |||||||||||||||||||||||||||||||    
T  42232919 ttaccatctccatcaccaacacactcttcct 42232889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 189
Target Start/End: Complemental strand, 42232929 - 42232899
Alignment:
Q  159 acaattctctttaccatctccatcaccaaca 189  Q
    |||||||||||||||||||||||||||||||    
T  42232929 acaattctctttaccatctccatcaccaaca 42232899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 49 - 437
Target Start/End: Original strand, 28945882 - 28946273
Alignment:
Q  49 tctttatcttctccatcaccaacatgctcttctggtaacttgtcctttttattaccatctccatcaccaacacactcttcctccaatttctctgtttctt 148  Q
    |||||||||||||||||||||||| ||||||| |||||||| |||||||  |||         |||||||||||||||||||||||||||||  ||||||    
T  28945882 tctttatcttctccatcaccaacacgctcttccggtaacttctccttttcttta---------tcaccaacacactcttcctccaatttctccttttctt 28945972  T
Q  149 gagcatcatgacaattctctttaccatctccatcaccaacaatctctcccagcaatttcctcttccccttagcaccacccctcgttttcttattctcaac 248  Q
     |||||||| ||||||||||||||||||||||||||||||||| ||| || |||| ||||||||||||||||||| ||||||||||||||| ||||||||    
T  28945973 cagcatcatcacaattctctttaccatctccatcaccaacaatttcttcccgcaacttcctcttccccttagcacaacccctcgttttctttttctcaac 28946072  T
Q  249 attctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgttatcctcacattcctcggctcc--------- 339  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  |||||||| ||||||||| |||||||||||             
T  28946073 attctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtcatcctcacactcctcggctcctccaccttc 28946172  T
Q  340 ---ttcacaccatcgaaatccccaacactcaattcaaaagtccccattttattcatcttattcctcatattccttgtcaccctcacattcttcttcactt 436  Q
       ||||||||||| ||||||||||||||||||||| ||  |||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||    
T  28946173 tctttcacaccatccaaatccccaacactcaattcagaaacccccattttatttatcttattcctcaaattccttgtcaccctcacatttttctttactt 28946272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 437
Target Start/End: Original strand, 28946334 - 28946384
Alignment:
Q  387 attcatcttattcctcatattccttgtcaccctcacattcttcttcacttc 437  Q
    |||| |||||||| ||  |||||||||||||||||||||||||||||||||    
T  28946334 attcttcttattcttcgaattccttgtcaccctcacattcttcttcacttc 28946384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 28945830 - 28945914
Alignment:
Q  45 cttttctttatcttctccatcaccaacatgctcttctggtaacttgtcctttttattaccatctccatcaccaacacactcttcc 129  Q
    |||||||||||||||| | |||||||||  |||||| ||||| || ||||| |  ||| | |||||||||||||||| |||||||    
T  28945830 cttttctttatcttcttcgtcaccaacacactcttccggtaatttctccttctctttatcttctccatcaccaacacgctcttcc 28945914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 28945786 - 28945866
Alignment:
Q  49 tctttatcttctccatcaccaacatgctcttctggtaacttgtcctttttattaccatctccatcaccaacacactcttcc 129  Q
    |||||||||||| |||||||||||  ||||||  |||| || |||||||  ||| | ||| | ||||||||||||||||||    
T  28945786 tctttatcttcttcatcaccaacacactcttcctgtaatttatccttttctttatcttcttcgtcaccaacacactcttcc 28945866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 27 - 437
Target Start/End: Original strand, 34823223 - 34823636
Alignment:
Q  27 ctcttctgttaacttgttcttttctttatcttctccatcaccaacatgctcttctggtaacttgtcctttttattaccatctccatcaccaacacactct 126  Q
    |||||| ||||| || | ||| |||||||||||||||||||||||| ||||||| |||||||| |||||||  |||         |||||||||||||||    
T  34823223 ctcttccgttaatttctccttctctttatcttctccatcaccaacacgctcttccggtaacttctccttttcttta---------tcaccaacacactct 34823313  T
Q  127 tcctccaatttctctgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctctcccagcaatttcctcttccccttagcaccac 226  Q
    ||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||||| ||| || |||| ||||||||||||||||||| ||    
T  34823314 tcctccaatttctccttttcttcagcatcatcacaattctctttaccatctccatcaccaacaatttcttcccgcaacttcctcttccccttagcacaac 34823413  T
Q  227 ccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgttatcctcac 326  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||  |||||||| ||||||||    
T  34823414 ccctcgttttctttttctcaacattctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtcatcctcac 34823513  T
Q  327 attcctcggctcc------------ttcacaccatcgaaatccccaacactcaattcaaaagtccccattttattcatcttattcctcatattccttgtc 414  Q
    | |||||||||||            ||||||||||| |||||||||| |||||||||| ||  |||||||||||| ||||||||||||| ||||||||||    
T  34823514 actcctcggctcctccaccttctctttcacaccatccaaatccccaatactcaattcagaaacccccattttatttatcttattcctcaaattccttgtc 34823613  T
Q  415 accctcacattcttcttcacttc 437  Q
    ||||||||||| ||||| |||||    
T  34823614 accctcacatttttctttacttc 34823636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 437
Target Start/End: Original strand, 34823697 - 34823747
Alignment:
Q  387 attcatcttattcctcatattccttgtcaccctcacattcttcttcacttc 437  Q
    |||| |||||||| ||  |||||||||||||||||||||||||||||||||    
T  34823697 attcttcttattcttcgaattccttgtcaccctcacattcttcttcacttc 34823747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 34823143 - 34823229
Alignment:
Q  43 ttcttttctttatcttctccatcaccaacatgctcttctggtaacttgtcctttttattaccatctccatcaccaacacactcttcc 129  Q
    ||||| |||||||||||| |||||||||||  ||||||  |||| || |||||||  ||| | ||| | ||||||||||||||||||    
T  34823143 ttcttctctttatcttcttcatcaccaacacactcttcctgtaatttttccttttctttatcttcttcgtcaccaacacactcttcc 34823229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 34823193 - 34823277
Alignment:
Q  45 cttttctttatcttctccatcaccaacatgctcttctggtaacttgtcctttttattaccatctccatcaccaacacactcttcc 129  Q
    |||||||||||||||| | |||||||||  |||||| | ||| || ||||| |  ||| | |||||||||||||||| |||||||    
T  34823193 cttttctttatcttcttcgtcaccaacacactcttccgttaatttctccttctctttatcttctccatcaccaacacgctcttcc 34823277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University