View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14814_low_5 (Length: 345)
Name: NF14814_low_5
Description: NF14814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14814_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 4124429 - 4124720
Alignment:
| Q |
14 |
atgaataagtcatttgtattatgacgtagaaaagccattaatgtgtaacaaaattgtttagacaatgatgattttttgaggaatactagaacttagtttg |
113 |
Q |
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| T |
4124429 |
atgaataagtcatttgtattatgacgtagaaaagccattaatgtgtaacaaaattgtttagacaatgatgattttttgaggaatactagaacttagtttg |
4124528 |
T |
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| Q |
114 |
agtttgatgagtttgtaatttgtaacatattcctattcaaactatcatgattcatgtggattgtggaagatgttttgtatagcttctggatatctatttt |
213 |
Q |
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| T |
4124529 |
-gtttgatgagtttgtaatttgtaacatattcctattcaaactatcatgattcatgtggattgtggaagatgttttgtatagcttctggatatctatttt |
4124627 |
T |
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| Q |
214 |
tgcataaataaaaacaaaagaaccaattaagaagtcaattcgtgacaattacaaggattgttgctaggggtgttgggggatcgatttggttaa |
306 |
Q |
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| T |
4124628 |
tgcataaataaaaacaaaagaaccaattaagaagtcaattcgtgacaattacaaggattgttgctaggggtgttgggggatcgatttggttaa |
4124720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 162
Target Start/End: Original strand, 4134974 - 4135122
Alignment:
| Q |
14 |
atgaataagtcatttgtattatgacgtagaaaa-gccattaatgtgtaacaaaattgttt-agacaatgatgattttttgaggaatactagaacttagtt |
111 |
Q |
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||||||||||||||| ||||||||| ||||||| ||||| |||||||||||||| ||||| ||| |||||| ||||||||||||||||||||||||| | |
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| T |
4134974 |
atgaataagtcatttatattatgacttagaaaaagccataaatgtgtaacaaaactgttttagatgatgatg-ttttttgaggaatactagaacttagat |
4135072 |
T |
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| Q |
112 |
tgagtttgatgagtttgtaatttgtaacatattcctattcaaactatcatg |
162 |
Q |
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| T |
4135073 |
aggcttt-atgagtttgtaatttgtaacatgttcctaatcaaactatcatg |
4135122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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