View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14814_low_9 (Length: 227)
Name: NF14814_low_9
Description: NF14814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14814_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 14728521 - 14728737
Alignment:
| Q |
5 |
cacataacccaagcaacattgtcaataaattatcttatacaacatttagaaaaatgaagatcataagtgagcagtaaaatatacctgaagagtatcattt |
104 |
Q |
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| T |
14728521 |
cacataacccaagcaacattgtcaataaattatcttatacaacatttagaaaaatgaagatcataagtgagcagtaaaacatacctgaagagtatcattt |
14728620 |
T |
|
| Q |
105 |
gatattgtgagagatttgacactaccaagtcgactcaatagctcaattgcaaattgcgtagtattttgctgttgattttggagatcataacacctaagat |
204 |
Q |
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| T |
14728621 |
gatattgtgagagatttgacactaccaagtcgactcaatagctcaattgcaaattgcttagtattttgctgttgattttggagatcataacacctaagat |
14728720 |
T |
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| Q |
205 |
caatacatgcatcaact |
221 |
Q |
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||||||||||||||||| |
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| T |
14728721 |
caatacatgcatcaact |
14728737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 7639271 - 7639196
Alignment:
| Q |
80 |
aaaatatacctgaagagtatcatttgatattgtgagagatttgacactaccaagtcgactcaatagctcaattgca |
155 |
Q |
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|||| ||||||||||| ||| | ||||| | |||||||||| ||||||| ||||| ||||||||||||||||||| |
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| T |
7639271 |
aaaacatacctgaagaaaatcctctgataatttgagagattttacactactaagtccactcaatagctcaattgca |
7639196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 17594965 - 17594750
Alignment:
| Q |
5 |
cacataacccaagcaacattgtcaataaattatcttatacaacatttagaaaaatgaagatcataagtgagcagtaaaatatacctgaagagtatcattt |
104 |
Q |
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| T |
17594965 |
cacataacccaagcaacattgtcaataaattatcttatacaacatttagaaaa-tgaagatcataagtgagcagtaaaacatacctgaagagtatcattg |
17594867 |
T |
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| Q |
105 |
gatattgtgagagatttgacactaccaagtcgactcaatagctcaattgcaaattgcgtagtattttgctgttgattttggagatcataacacctaagat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17594866 |
gatattgtgagagatttgacactaccaagtcgactcaatagctcaattgcaaattgcgtagtattttgctgttgattttggagatcataacacctaagat |
17594767 |
T |
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| Q |
205 |
caatacatgcatcaact |
221 |
Q |
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||||||||||||||||| |
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| T |
17594766 |
caatacatgcatcaact |
17594750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 16131446 - 16131405
Alignment:
| Q |
112 |
tgagagatttgacactaccaagtcgactcaatagctcaattg |
153 |
Q |
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| T |
16131446 |
tgagagatttgacactaccaagtcccttcaatagctcaattg |
16131405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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