View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14815_high_5 (Length: 232)
Name: NF14815_high_5
Description: NF14815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14815_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 28294609 - 28294836
Alignment:
| Q |
1 |
atagcatacatgaacgttagtatgtgaggtttgtaagactaaatcctagtaaaagaaaattatcctatctttgtcatgacaagatatatatgtactctca |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
28294609 |
atagcatacatgaacattagtatgtgaggtttgtaagactaaatcctagtaaaagaaaattatcctatctttgtcatgacaaaatatatatgtactgaca |
28294708 |
T |
|
| Q |
101 |
ttcaaagctaactaggcaagagaaattgaactcgtcacaagtatgttcaaaatgtaatattggatactcaactcgtcacaagtgttacatacacaataag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
28294709 |
ttcaaagctaactaggcaagagaaattgaactcgttacaagtatgttcaaaatgtaatattggatactcaactcgtcacaagtgttacattcacaatgag |
28294808 |
T |
|
| Q |
201 |
agaaacctagctggatccatgaagtaca |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
28294809 |
agaaacctagctggatccatgaagtaca |
28294836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University