View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14815_low_1 (Length: 564)
Name: NF14815_low_1
Description: NF14815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14815_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 14 - 434
Target Start/End: Complemental strand, 35034745 - 35034318
Alignment:
| Q |
14 |
cataggcaatgcagatggtggtgatggtggtggcggcatgctgacatttctacgcactccagctgcattagtatttctcgagtatgttggtc---ttttc |
110 |
Q |
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| T |
35034745 |
cataggcaatgcagatggtggtgatggtggtggcggcatgctggcatttctacgcactccagctgcattagtatttctcgagtatgttggtcgacttttc |
35034646 |
T |
|
| Q |
111 |
ttatcaacgacaggtccatgtgtatgttttccatcatatgtaacaagtacatattttggatctttagcatccctttccacttgttttttaatgttacaat |
210 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35034645 |
ttatcaatgacaggtccatgggtatgttttccatcatatgtaacaagtacatattttggatctttagcatccctttccacttgttttttaatgttacaat |
35034546 |
T |
|
| Q |
211 |
tgtgtgttgaacatttgtaataccccctacaattcacacaatattaaataattaggaatcaaaacatattcatatatatgattcatgatacaatgatact |
310 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35034545 |
tgtgtgttgaacatttgtagtaccccctacaattcacacaatattaaataattaggaatcaaaacatattcatatatatgatgcatgatacaatgatact |
35034446 |
T |
|
| Q |
311 |
aaaaccttttatgtaaatggacaacttttagataatgataagaaactttgtagctatttaaaacacacgcg------catgcataattacaattagggtt |
404 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| |||| ||||| |
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| T |
35034445 |
aaaacc-tttatgtaaatggacaatgtttagataatgataagaaactttgtagctattcaaaacacacacgcgcacacatgcataattaaaatt-gggtt |
35034348 |
T |
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| Q |
405 |
aatatgtctttactccacgtaatataggtc |
434 |
Q |
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|||| ||||||| || |||||||||||| |
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| T |
35034347 |
aataggtctttatcccctgtaatataggtc |
35034318 |
T |
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