View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14815_low_2 (Length: 516)
Name: NF14815_low_2
Description: NF14815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14815_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 19 - 516
Target Start/End: Complemental strand, 32508996 - 32508496
Alignment:
| Q |
19 |
cagatgaaaaagaaccatactttcatagcacctatatgtgtgtaaaattcttccataattgaacttcaatgtgatcatcccctgcagatgtcttccactt |
118 |
Q |
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| T |
32508996 |
cagatgaaaaagaaccatactttcatagcacctatatgtgtgtaaaattcttccataattgaacttcaatgtgatcatcccctgcagatgtcttccactt |
32508897 |
T |
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| Q |
119 |
tccccacttgttttacctactagaattaatttacccaaattcattgcatattgagtatatactgtgacatgcagatgcccccactacttaaaacctcaac |
218 |
Q |
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| T |
32508896 |
tccccacttgttctacctactagaattaatctacccaaattcattgcatattgagtatataatgtgacatgcagatgcccccactacttaaaacctcaac |
32508797 |
T |
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| Q |
219 |
tgacttaagcaaggttgaggaacttgaataaaaaggtgtgcctagtgcatgtttgaaattgcattgagtttgacaagatcacaatgacaccatatttttg |
318 |
Q |
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| T |
32508796 |
tgacttaagcaaggttgaggaacttgaataaaaaggtgtgcctagtgcgtgtttgaaattgcattgagtttgacaagatcacaatgacaccatatttttg |
32508697 |
T |
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| Q |
319 |
ttgaagtt---gagtatagtttttgtcaaaatcacagtggcacactgtgattctaccatactcaccgtaaatccaagcatgcctctaatattttggttcc |
415 |
Q |
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| T |
32508696 |
ttgaagttctagagtatagtttttgtcaaaatcacagtggcacactgtgattctaccatactcaccgtaaatccaaacatgcctctaatatttgggttcc |
32508597 |
T |
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| Q |
416 |
cagagggaagatgaggtttcaaacccaatgataaaaaccacttctcagaacccgaagttgaagtttcctttggggactatactaggttcatattcagaaa |
515 |
Q |
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| T |
32508596 |
cagagggaagatgaggtttcaaacccaatgataaaaaccacttctcaaaacccgaagttcaagtttcatttggggactatactgggttcatattcagaaa |
32508497 |
T |
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| Q |
516 |
a |
516 |
Q |
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| T |
32508496 |
a |
32508496 |
T |
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Back To:
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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 10460054 - 10459998
Alignment:
| Q |
326 |
tgagtatagtttttgtcaaaatcacagtggcacactgtgattctaccatactcaccg |
382 |
Q |
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| T |
10460054 |
tgagtgtagcttttgtcaaaatcacagtggcacattgttattctgccaaactcaccg |
10459998 |
T |
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