View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14815_low_3 (Length: 442)

Name: NF14815_low_3
Description: NF14815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14815_low_3
NF14815_low_3
[»] chr8 (4 HSPs)
chr8 (1-427)||(32116103-32116525)
chr8 (7-83)||(15337040-15337112)
chr8 (7-83)||(15426105-15426177)
chr8 (7-83)||(15517409-15517481)
[»] chr2 (5 HSPs)
chr2 (11-91)||(28568054-28568130)
chr2 (7-83)||(37130130-37130202)
chr2 (7-81)||(22707901-22707971)
chr2 (7-78)||(23870853-23870920)
chr2 (7-92)||(21256803-21256884)
[»] chr1 (1 HSPs)
chr1 (7-91)||(4230193-4230274)
[»] chr3 (2 HSPs)
chr3 (7-90)||(43135917-43135996)
chr3 (7-60)||(132776-132829)
[»] scaffold0190 (1 HSPs)
scaffold0190 (7-83)||(7146-7218)
[»] scaffold0077 (1 HSPs)
scaffold0077 (7-91)||(12042-12122)
[»] chr7 (1 HSPs)
chr7 (7-83)||(13346932-13347004)
[»] chr6 (2 HSPs)
chr6 (8-90)||(11793823-11793901)
chr6 (7-51)||(18258442-18258486)
[»] scaffold0480 (1 HSPs)
scaffold0480 (14-91)||(3430-3503)


Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 32116525 - 32116103
Alignment:
Q  1 ctataggtccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaacctagctattttgactgcattaaatgagaacctttggagatgag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    ||||||||||||||||||| || |||||||||||||    
T  32116525 ctataggtccaacttcgataggaatgagaaaacaatttcttcgacgataagatcaactta----ttttgactgcattaaatgataatctttggagatgag 32116430  T
Q  101 gtaatatatgtnnnnnnntaaactaaagctctgtgtcgttgggatcaatatgtcaagtgatagatattattttggagttgagacattatacgttaaaaat 200  Q
    | |||||||||       |||| ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  32116429 gcaatatatgtaaaaaa-taaattaaagctctatgtcgttgggatcaatatgtca-gcgatagatattattttggagttgagacattatacgttaaaaat 32116332  T
Q  201 ttaagccccgtgttgatcaccactatttt-agaggtgagacattgtggtttcttatgtactatgtaatttctcttgtttcgagacatttgacagaaattc 299  Q
    |||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32116331 ttaagcccggtgttgatcgccactatttttagagctgagacattgtggtttcttatgtactatgtaatttctcttgtttcgagacatttgacagaaattc 32116232  T
Q  300 atgagtgacaaagagaatgatagtatgattgatggatcaagttgacatatcannnnnnnnctacactctacttgaa--tggctaatcgacggaattgatg 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||  ||||||||||||||||||||||    
T  32116231 atgagtgacaaagagaatgatagtatgattgatggatcaagttgacatatcattttttttctacactctacttgaatgtggctaatcgacggaattgatg 32116132  T
Q  398 atatttgtaactatggaaaggtgttgtatc 427  Q
    ||||||||||| |||| |||||||||||||    
T  32116131 atatttgtaaccatgg-aaggtgttgtatc 32116103  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 15337112 - 15337040
Alignment:
Q  7 gtccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaacctagctattttgactgcattaaatga 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  15337112 gtccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaac----ctattttgactgcattaaatga 15337040  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 15426177 - 15426105
Alignment:
Q  7 gtccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaacctagctattttgactgcattaaatga 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  15426177 gtccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaac----ctattttgactgcattaaatga 15426105  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 15517481 - 15517409
Alignment:
Q  7 gtccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaacctagctattttgactgcattaaatga 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  15517481 gtccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaac----ctattttgactgcattaaatga 15517409  T

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Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 28568054 - 28568130
Alignment:
Q  11 aacttcgataggaatgagaaaacaatttcttcgatgataagatcaacctagctattttgactgcattaaatgagaaccttt 91  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    |||||||||||||||||||||| |||||||    
T  28568054 aacttcgataggaatgagaaaacaatttcttcgatgataaggtcaac----ctattttgactgcattaaatgataaccttt 28568130  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 37130202 - 37130130
Alignment:
Q  7 gtccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaacctagctattttgactgcattaaatga 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    ||||||||||||||||||||||    
T  37130202 gtccaacttcgataggaatgagaaaacaatttcttcgatgataaggtcaac----ctattttgactgcattaaatga 37130130  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 22707971 - 22707901
Alignment:
Q  7 gtccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaacctagctattttgactgcattaaat 81  Q
    ||||||||||||| |||  |||||||||||||||||||||| ||| |||||    ||||||||||||||||||||    
T  22707971 gtccaacttcgatcggagagagaaaacaatttcttcgatgacaaggtcaac----ctattttgactgcattaaat 22707901  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 23870853 - 23870920
Alignment:
Q  7 gtccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaacctagctattttgactgcatta 78  Q
    ||||||||||||| |||  |||||||||||||||||||||| ||| |||||    |||||||||||||||||    
T  23870853 gtccaacttcgatcggagagagaaaacaatttcttcgatgagaaggtcaac----ctattttgactgcatta 23870920  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 21256803 - 21256884
Alignment:
Q  7 gtccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaacctagctattttgactgcattaaatgagaacctttg 92  Q
    ||||||||| ||||  || ||||||||||||| |||||||| |||||||    | |||||||||||||||||||||| | ||||||    
T  21256803 gtccaactttgatataaaagagaaaacaatttattcgatgacaagatca----atctattttgactgcattaaatgatagcctttg 21256884  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 4230193 - 4230274
Alignment:
Q  7 gtccaacttcgataggaa-tgagaaaacaatttcttcgatgataagatcaacctagctattttgactgcattaaatgagaaccttt 91  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||    |||||||||| ||||||||||| |||||||    
T  4230193 gtccaacttcgataggaaatgagaaaacaatttcttcgatgataaggtcaac----ctattttgaccgcattaaatgataaccttt 4230274  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 43135917 - 43135996
Alignment:
Q  7 gtccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaacctagctattttgactgcattaaatgagaacctt 90  Q
    ||||||||||||||||||||| || ||||||||||| |||||||| |||||    |||||||||||||||||||||| ||||||    
T  43135917 gtccaacttcgataggaatgaaaagacaatttcttcaatgataaggtcaac----ctattttgactgcattaaatgataacctt 43135996  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 132776 - 132829
Alignment:
Q  7 gtccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaaccta 60  Q
    |||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||    
T  132776 gtccaacttcgataagaatgagataacaatttcttcgattataaggtcaaccta 132829  T

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Target: scaffold0190 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 7218 - 7146
Alignment:
Q  7 gtccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaacctagctattttgactgcattaaatga 83  Q
    |||||||||||||||||||||||| ||||||| |||||||||||| |||||     |||||||||||||||||||||    
T  7218 gtccaacttcgataggaatgagaagacaattttttcgatgataaggtcaac----ttattttgactgcattaaatga 7146  T

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Target: scaffold0077 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 12122 - 12042
Alignment:
Q  7 gtccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaacctagctattttgactgcattaaatgagaaccttt 91  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||| |||||    |||||||||||||||||||| | |||||||    
T  12122 gtccaacttcgataggaaagagaaaacaatttcttcaatgacaaggtcaac----ctattttgactgcattaaataataaccttt 12042  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 13346932 - 13347004
Alignment:
Q  7 gtccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaacctagctattttgactgcattaaatga 83  Q
    |||||||||||||| |||||||||||||||||||||||||| ||| |||    | ||||||||||||||||||||||    
T  13346932 gtccaacttcgataagaatgagaaaacaatttcttcgatgacaaggtca----atctattttgactgcattaaatga 13347004  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 11793901 - 11793823
Alignment:
Q  8 tccaacttcgataggaatgagaaaacaatttcttcgatgataagatcaacctagctattttgactgcattaaatgagaacctt 90  Q
    ||||||||| |||| || ||||| |||||||||||||||||||| |||||    |||||||||||||||||||||| ||||||    
T  11793901 tccaacttcaatagaaacgagaagacaatttcttcgatgataaggtcaac----ctattttgactgcattaaatgataacctt 11793823  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 18258442 - 18258486
Alignment:
Q  7 gtccaacttcgataggaatgagaaaacaatttcttcgatgataag 51  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  18258442 gtccaacttcgataggaatgagaagacaacttcttcgatgataag 18258486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0480 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 3503 - 3430
Alignment:
Q  14 ttcgataggaatgagaaaacaatttcttcgatgataagatcaacctagctattttgactgcattaaatgagaaccttt 91  Q
    |||||||||| ||||||||||||||||| |||||| || |||||    |||||||||||  ||||||||| |||||||    
T  3503 ttcgataggagtgagaaaacaatttctttgatgattaggtcaac----ctattttgactatattaaatgataaccttt 3430  T

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