View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14815_low_4 (Length: 356)
Name: NF14815_low_4
Description: NF14815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14815_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 13766100 - 13765748
Alignment:
| Q |
1 |
caacaggacattatccaaattagaaatatgaatgaaatcaatatcgaccatggtcggtctataggtctatgggtctgagaaatgatgcgtaaagaaattc |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13766100 |
caacagaacattatccaaattagaaatatgaaagaaatcaatatcgcccatggtcggtctataggtctatgggtctgagaaatgatgcgtaaagaaattc |
13766001 |
T |
|
| Q |
101 |
acaatcgcttgtttgatctttgcaacatcctccatccacctttccaccctaggtgccgagatggaattcctcatacctctattcttcacacaggcgtgga |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13766000 |
acaatcgcttgtttgttctttgcaacatcatccatccacctttccaccctaggagccgagatggaattcctcatacctctattcttcacacaggcgagga |
13765901 |
T |
|
| Q |
201 |
aataagttgtattatgtccttctctctctcaaccattttgctcttgaccattggaacgtctacgagtcttagatcttcaaaatagtccacaaatacgcca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||| |||||| ||| ||||||| |||| |
|
|
| T |
13765900 |
aataagttgtattatgtccttctctctctcaaccactttgctcttgaccattggaacatctgcgagtcttggatcgtcaaaacagtttacaaataggcca |
13765801 |
T |
|
| Q |
301 |
aacactggttcttattagctacctccaccacaacaagatccctacccttagcc |
353 |
Q |
| |
|
||||||||||||||| |||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
13765800 |
aacactggttcttatcagctacctccacaaaaacaagatccctccccttagcc |
13765748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University