View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14815_low_8 (Length: 221)
Name: NF14815_low_8
Description: NF14815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14815_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 17105513 - 17105322
Alignment:
| Q |
15 |
cagagagataagttaactccattgtagaagctcagaacttaatatgtgtatgaggctggtgaataatttttacaatgcagctactactatatatagtgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17105513 |
cagagagataagttaactccattgtagaagctcagaacttaatatgtgtatgaggctggtgaataatttttacaatgcagctactactatatatagtgaa |
17105414 |
T |
|
| Q |
115 |
tttgatgacctcctcataatccacatgttgtcattttgtaacttcacttgtgattcattgaatgtactgaccgactgagttaatattcattg |
206 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17105413 |
tttgatgacctcctcataatgcacatgttgtcattttgtaacttcacttgtgattcattgaatgtactgaccgactgagttaatattcattg |
17105322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 17096238 - 17096106
Alignment:
| Q |
23 |
taagttaactccattgtagaagctcagaacttaatatgtgtatgaggctggtgaataatttttacaatgcagctactactatatatagtgaatttgatga |
122 |
Q |
| |
|
||||| |||||||||||||||||| |||| ||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17096238 |
taagtgaactccattgtagaagcttagaatttaatatgtgtattaggctggtgaagaattgttacactgcagctactactatatatagtgaatttgatga |
17096139 |
T |
|
| Q |
123 |
cctcctcataatccacatgttgtcattttgtaa |
155 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| |
|
|
| T |
17096138 |
cctcctcataatgcacatattgtcattttgtaa |
17096106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 17098283 - 17098158
Alignment:
| Q |
20 |
agataagttaactccattgtagaagctcagaacttaatatgtgtatgaggctggtgaataatttttacaatgcagctactactatatatagtgaatttga |
119 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| || ||||||||||||||||||||||||||||| |
|
|
| T |
17098283 |
agatgagtgaactccattgtagaagcttagaacttaatatgtgtatgaggctggtgaagaattgttagaacgcagctactactatatatagtgaatttga |
17098184 |
T |
|
| Q |
120 |
tgacctcctcataatccacatgttgt |
145 |
Q |
| |
|
||||||||||| ||| ||||||||| |
|
|
| T |
17098183 |
tgacctcctcaaaatgtacatgttgt |
17098158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 17102937 - 17102803
Alignment:
| Q |
20 |
agataagttaactccattgtagaagctcagaacttaatatgtgtatgaggctggtgaataatttttacaatgcagctactactatatatagtgaatttga |
119 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| || ||| |||||| |||| |||||||||||| |
|
|
| T |
17102937 |
agatgagtgaactccattgtagaagcttagaacttaatatgtgtatgaggctggtgaagaattgttagaacgcaattactac-atatttagtgaatttga |
17102839 |
T |
|
| Q |
120 |
tgacctcctcataatccacatgttgtcattttgtaa |
155 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
17102838 |
tgacctcctcataatgtacatgttgttattttgtaa |
17102803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 17105257 - 17105211
Alignment:
| Q |
153 |
taacttcacttgtgattcattgaatgtactgaccgactgagttaata |
199 |
Q |
| |
|
|||| ||||||| |||||||||||||| |||||||||| |||||||| |
|
|
| T |
17105257 |
taacatcacttgcgattcattgaatgtgctgaccgactaagttaata |
17105211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 17098851 - 17098888
Alignment:
| Q |
162 |
ttgtgattcattgaatgtactgaccgactgagttaata |
199 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17098851 |
ttgtgattcatcaaatgtactgaccgactgagttaata |
17098888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University