View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14816_high_1 (Length: 667)

Name: NF14816_high_1
Description: NF14816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14816_high_1
NF14816_high_1
[»] chr4 (3 HSPs)
chr4 (403-647)||(1348363-1348607)
chr4 (23-178)||(1348044-1348203)
chr4 (253-345)||(1348272-1348364)
[»] chr7 (4 HSPs)
chr7 (453-597)||(9735793-9735940)
chr7 (453-590)||(4314297-4314437)
chr7 (506-597)||(32816947-32817038)
chr7 (517-597)||(2890693-2890773)
[»] chr5 (5 HSPs)
chr5 (453-594)||(11222221-11222365)
chr5 (506-594)||(26649441-26649528)
chr5 (506-594)||(26649593-26649680)
chr5 (506-594)||(26921026-26921113)
chr5 (506-594)||(26921178-26921265)
[»] scaffold0771 (1 HSPs)
scaffold0771 (524-597)||(5509-5582)
[»] chr3 (1 HSPs)
chr3 (524-597)||(13953369-13953442)
[»] scaffold0091 (1 HSPs)
scaffold0091 (506-594)||(15785-15872)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 403 - 647
Target Start/End: Original strand, 1348363 - 1348607
Alignment:
Q  403 ataatatatacaagatttaatgttcaaatcacggacaccactnnnnnnncaagaacattcatgatcatattcattaagattatgtcataaaggacttaag 502  Q
    |||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1348363 ataatatatacaagatttaatgttcaaatcccggacaccactaaaaaaacaagaacattcatgatcatattcattaagattatgtcataaaggacttaag 1348462  T
Q  503 atgaagaatcttttatcactattcaagatatgacttcggccaattgaattcaaacaaaataattttaattttgagaaaggtttctcatgttcttaacata 602  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  1348463 atgaagaatcttttatcactattcaagatatgacttcggctagttgaaatcaaacaaaataattttgattttgagaaaggtttctcacgttcttaacata 1348562  T
Q  603 acattattgtcatttatgttattcacttcgtcccatattaggtgg 647  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  1348563 acattattgtcatttatgttattcactccgtcccatattaggtgg 1348607  T

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Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 1348044 - 1348203
Alignment:
Q  23 agtgttgaatgagtcgatgagagagattccattgggattcgattatatgatgaaaagagattcctctcagtcagtttttggggttttgaag----gtaaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    |||||    
T  1348044 agtgttgaatgagtcgatgagagagattccattgggattcgattatatgatgaaaagagatttctctcagtcagtttttggggttttgaaggtaagtaaa 1348143  T
Q  119 ccccattagcgttcagaaacagagaatatatacactttattacttcactttgctcttctc 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1348144 ccccattagcgttcagaaacagagaatatatacactttattacttcactttgctcttctc 1348203  T

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Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 253 - 345
Target Start/End: Original strand, 1348272 - 1348364
Alignment:
Q  253 ggggtgagtgagttagaaatgactaggatactcggattggcattcacatatacaatgtatttattcaacaaaataaaacaagatacaatgtat 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1348272 ggggtgagtgagttagaaatgactaggatactcggattggcattcacatatacaatgtatttattcaacaaaataaaacaatatacaatgtat 1348364  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 453 - 597
Target Start/End: Original strand, 9735793 - 9735940
Alignment:
Q  453 aagaacattcatgatcatattcattaagattatgtcataaaggacttaagatg----aagaatcttttatcactattcaagatatgacttcggccaattg 548  Q
    ||||| ||| |||||||||| | |  ||||||| ||||||| |||||| ||||    |||||||||  ||||||||||||||||||| || ||  ||| |    
T  9735793 aagaaaatttatgatcatatgcttggagattatatcataaaagacttatgatggtccaagaatcttacatcactattcaagatatgaatt-ggagaatag 9735891  T
Q  549 aattcaaacaaaataattttaattttgagaaaggtttctcatgttctta 597  Q
    || |||| ||||  |||||| | ||||||||||||||||||||||||||    
T  9735892 aaatcaatcaaatgaattttgactttgagaaaggtttctcatgttctta 9735940  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 590
Target Start/End: Complemental strand, 4314437 - 4314297
Alignment:
Q  453 aagaacattcatgatcatattcattaagattatgtcataaaggacttaagatg----aagaatcttttatcactattcaagatatgacttcggccaattg 548  Q
    ||||| ||| |||||||||| | |  ||||||| ||||||| |||||| ||||    ||||||||| |||||||||||||||||||| || ||  ||| |    
T  4314437 aagaaaattgatgatcatatgcttggagattatatcataaaagacttatgatggtccaagaatcttatatcactattcaagatatga-tttggagaatag 4314339  T
Q  549 aattcaaacaaaataattttaattttgagaaaggtttctcat 590  Q
    || |||| ||||| |||||| | ||| |||||||||||||||    
T  4314338 aaatcaatcaaaagaatttttactttcagaaaggtttctcat 4314297  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 597
Target Start/End: Original strand, 32816947 - 32817038
Alignment:
Q  506 aagaatcttttatcactattcaagatatgacttcggccaattgaattcaaacaaaataattttaattttgagaaaggtttctcatgttctta 597  Q
    |||||||||  |||| |||||||||||||| || ||  ||| ||| |||| ||||  |||||| | ||||||||||||||||||||||||||    
T  32816947 aagaatcttccatcattattcaagatatgatttgggagaatagaaatcaatcaaataaatttttaatttgagaaaggtttctcatgttctta 32817038  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 517 - 597
Target Start/End: Original strand, 2890693 - 2890773
Alignment:
Q  517 atcactattcaagatatgacttcggccaattgaattcaaacaaaataattttaattttgagaaaggtttctcatgttctta 597  Q
    |||| |||||||||||||| || ||  ||| ||| |||| ||||  |||||| | ||||||||||||||||||||||||||    
T  2890693 atcattattcaagatatgatttaggagaatagaaatcaatcaaatgaatttttactttgagaaaggtttctcatgttctta 2890773  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 453 - 594
Target Start/End: Original strand, 11222221 - 11222365
Alignment:
Q  453 aagaacattcatgatcatattcattaagattatgtcataaaggacttaagatg----aagaatcttttatcactattcaagatatgacttcggccaattg 548  Q
    ||||| |||||||||||||| | |  ||||||| ||||||| |||||| |||     |||||||||  ||||||||||||||||||| || ||  ||| |    
T  11222221 aagaaaattcatgatcatatacttggagattatatcataaaagacttatgatagtccaagaatcttacatcactattcaagatatga-tttggagaatag 11222319  T
Q  549 aattcaaacaaaataattttaattttgagaaaggtttctcatgttc 594  Q
    || |||| ||||  |||||| | ||||| |||||||||||||||||    
T  11222320 aaatcaatcaaaggaattttgactttgaaaaaggtttctcatgttc 11222365  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 594
Target Start/End: Original strand, 26649441 - 26649528
Alignment:
Q  506 aagaatcttttatcactattcaagatatgacttcggccaattgaattcaaacaaaataattttaattttgagaaaggtttctcatgttc 594  Q
    |||||||||  ||||||||| ||||||||| || ||  ||| ||| |||| ||||  |||||| | |||||||||||||||||||||||    
T  26649441 aagaatcttccatcactattaaagatatgattt-ggagaatagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgttc 26649528  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 594
Target Start/End: Original strand, 26649593 - 26649680
Alignment:
Q  506 aagaatcttttatcactattcaagatatgacttcggccaattgaattcaaacaaaataattttaattttgagaaaggtttctcatgttc 594  Q
    |||||||||  ||||||||| ||||||||| || ||  ||| ||| |||| ||||  |||||| | |||||||||||||||||||||||    
T  26649593 aagaatcttccatcactattaaagatatgattt-ggagaatagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgttc 26649680  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 594
Target Start/End: Original strand, 26921026 - 26921113
Alignment:
Q  506 aagaatcttttatcactattcaagatatgacttcggccaattgaattcaaacaaaataattttaattttgagaaaggtttctcatgttc 594  Q
    |||||||||  ||||||||| ||||||||| || ||  ||| ||| |||| ||||  |||||| | |||||||||||||||||||||||    
T  26921026 aagaatcttccatcactattaaagatatgattt-ggagaatagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgttc 26921113  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 594
Target Start/End: Original strand, 26921178 - 26921265
Alignment:
Q  506 aagaatcttttatcactattcaagatatgacttcggccaattgaattcaaacaaaataattttaattttgagaaaggtttctcatgttc 594  Q
    |||||||||  ||||||||| ||||||||| || ||  ||| ||| |||| ||||  |||||| | |||||||||||||||||||||||    
T  26921178 aagaatcttccatcactattaaagatatgattt-ggagaatagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgttc 26921265  T

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Target: scaffold0771 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 597
Target Start/End: Complemental strand, 5582 - 5509
Alignment:
Q  524 ttcaagatatgacttcggccaattgaattcaaacaaaataattttaattttgagaaaggtttctcatgttctta 597  Q
    |||||||||||| || ||  ||| ||| |||| ||||  |||||| | ||||||||||||||||||||||||||    
T  5582 ttcaagatatgatttgggagaatagaaatcaatcaaatgaatttttactttgagaaaggtttctcatgttctta 5509  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 597
Target Start/End: Complemental strand, 13953442 - 13953369
Alignment:
Q  524 ttcaagatatgacttcggccaattgaattcaaacaaaataattttaattttgagaaaggtttctcatgttctta 597  Q
    |||||||||||| || ||  ||| ||| |||| ||||  |||||| | ||||||||||||||||||||||||||    
T  13953442 ttcaagatatgatttgggagaatagaaatcaatcaaatgaatttttactttgagaaaggtttctcatgttctta 13953369  T

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Target: scaffold0091 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 594
Target Start/End: Complemental strand, 15872 - 15785
Alignment:
Q  506 aagaatcttttatcactattcaagatatgacttcggccaattgaattcaaacaaaataattttaattttgagaaaggtttctcatgttc 594  Q
    |||||||||  ||||||||||||||||| | || ||  ||| ||| |||| ||||  |||||| | |||||||||||||||||||||||    
T  15872 aagaatcttccatcactattcaagatataattt-ggagaatagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgttc 15785  T

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