View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14816_high_11 (Length: 228)
Name: NF14816_high_11
Description: NF14816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14816_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 4819721 - 4819513
Alignment:
| Q |
14 |
attggtggtccagcaatggcagtcattgcattaat----ccatccattgaagtagctgtcgttgatatctcgaaatcgcgtattgcagtgtggcacaaca |
109 |
Q |
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| T |
4819721 |
attggtggtccagcaatggcagtcattgcattaatatgtccatccattgaagtagctgtcgttgatatctcgaaatcgcgtattgcagtgtggcacaaca |
4819622 |
T |
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| Q |
110 |
atcaacttcctatctatgagcccggtcttgatga--tagtaaagcaatgtcgcggcaagagctttttcttcagccttcaagttgaaaaacatgtctacga |
207 |
Q |
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| T |
4819621 |
atcaagttcctatctatgagtccggtcttgatgatgtagtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatgtctacga |
4819522 |
T |
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| Q |
208 |
agttgaaat |
216 |
Q |
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| T |
4819521 |
agttgaaat |
4819513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 218
Target Start/End: Complemental strand, 10779477 - 10779306
Alignment:
| Q |
48 |
tccatccattgaagtagctgtcgttgatatctcgaaatcgcgtattgcagtgtggcacaacaatcaacttcctatctatgagcccggtcttgatga--ta |
145 |
Q |
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| T |
10779477 |
tccatccattgacgtagcagtggtcgatatctcgaaatcgcgcattgcagtgtggaacaacaatcaacttcctatctatgagcaaaatcttgattatgta |
10779378 |
T |
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| Q |
146 |
gtaaagcaatgtcgcggcaagagctttttcttcagccttcaagttgaaaaacatgtctacgaagttgaaattg |
218 |
Q |
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| T |
10779377 |
gtaaagtaatgtcgcagcaaga-ccttttcttcagcactgatgttgaaaaacatgtctatgaagctaaaattg |
10779306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 209
Target Start/End: Complemental strand, 4829482 - 4829320
Alignment:
| Q |
48 |
tccatccattgaagtagctgtcgttgatatctcgaaatcgcgtattgcagtgtggcacaacaatcaacttcctatctatgagcccggtcttgatga--ta |
145 |
Q |
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| T |
4829482 |
tccatccactgaagtagcagtcgtcgatatcttgtaattgagcattgcactgtggaacaaccatcaacttcccatctacgagcctggtcttgatgatgta |
4829383 |
T |
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| Q |
146 |
gtaaagcaatgtcgcggcaagagctttttcttcagccttcaagttgaaaaacatgtctacgaag |
209 |
Q |
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| T |
4829382 |
gcaaagcaatttcgtggcaagaac-ttttcttcagctatgatgttaaaaaatatgtctacgaag |
4829320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 4804060 - 4803914
Alignment:
| Q |
74 |
atatctcgaaatcgcgtattgcagtgtggcacaacaatcaacttcctatctatgagcccggtcttgatga--tagtaaagcaatgtcgcggcaagagctt |
171 |
Q |
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| T |
4804060 |
atatctcgaaatcgtgcattgcagccttgaatagcaatcaacttcctatctatgagccaggtattgatgatgtagtaaagcaatgtcgatgcaagtacct |
4803961 |
T |
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| Q |
172 |
tttcttcagccttcaagttgaaaaacatgtctacgaagttgaaattg |
218 |
Q |
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| T |
4803960 |
tgtcttcaacactgatgttgaaaaacatgtctatgaagctgacattg |
4803914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 4797949 - 4798043
Alignment:
| Q |
110 |
atcaacttcctatctatgagcccggtcttgatgat--agtaaagcaatgtcgcggcaagagctttttcttcagccttcaagttgaaaaacatgtc |
202 |
Q |
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| T |
4797949 |
atcaacttgccatctatgaaccaggtcttgatgatgtagtaaagcaatatcgcggcaagaaccttttcttcagcactgatgttaaaaaacatgtc |
4798043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 4824574 - 4824479
Alignment:
| Q |
67 |
gtcgttgatatctcgaaatcgcgtattgcagtgtggcacaacaatcaacttcctatctatgagcccggtcttgatg--atagtaaagcaatgtcgc |
160 |
Q |
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| T |
4824574 |
gtcgttgatatcacaaaatcgcgcattgtagcatggtacaacgatcaaattcctatctatcagccaggttttgatggtttagtaaagcaatgtcgc |
4824479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 4835791 - 4835758
Alignment:
| Q |
110 |
atcaacttcctatctatgagcccggtcttgatga |
143 |
Q |
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| T |
4835791 |
atcaacttcctatctatgagcccgatcttgatga |
4835758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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