View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14816_high_5 (Length: 431)
Name: NF14816_high_5
Description: NF14816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14816_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 37902886 - 37903289
Alignment:
| Q |
18 |
agcatcacctttctgctttgggtttgtagattggagaagattcaacagcagttctaatcctgaagatttagcagcatagtgattaaaaatactttctatg |
117 |
Q |
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| T |
37902886 |
agcatcacctttctgctttgggtttgtagattggagaagattcaacagcagttctaatcctgaaaatttagcagcatagtgattaaaaatactttctatg |
37902985 |
T |
|
| Q |
118 |
cactgccagagagggggacaagaaaagtaaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcaggggaacataaatgtgca |
217 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37902986 |
cactgccagagagggggacaaaaaaaataaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcaggggaacataaatgtgca |
37903085 |
T |
|
| Q |
218 |
agagcaagagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaagaggaattgatagaataatca |
317 |
Q |
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| T |
37903086 |
agagcaagagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaagaggaattgatagaataatca |
37903185 |
T |
|
| Q |
318 |
aaaccaataatgtaagcaacagtacaaggattgagtaggctgataatttgggagaaaacttactcgcccttgcatcttctcttccaatctttttaacgcc |
417 |
Q |
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| T |
37903186 |
aaaccaataatgtaagcaacagtacaaggattgagtaggctgataatttgggagaaaacttactcgcccttgcatcttctcttccaatctttttaacgtc |
37903285 |
T |
|
| Q |
418 |
tttg |
421 |
Q |
| |
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|||| |
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| T |
37903286 |
tttg |
37903289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 37909397 - 37909800
Alignment:
| Q |
18 |
agcatcacctttctgctttgggtttgtagattggagaagattcaacagcagttctaatcctgaagatttagcagcatagtgattaaaaatactttctatg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37909397 |
agcatcacctttctgctttgggtttgtagattggagaagattcaacagcagttctaatcctgaaaatttagcagcatagtgattaaaaatactttctatg |
37909496 |
T |
|
| Q |
118 |
cactgccagagagggggacaagaaaagtaaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcaggggaacataaatgtgca |
217 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909497 |
cactgccagagagggggacaaaaaaaataaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcaggggaacataaatgtgca |
37909596 |
T |
|
| Q |
218 |
agagcaagagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaagaggaattgatagaataatca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909597 |
agagcaagagctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaagaggaattgatagaataatca |
37909696 |
T |
|
| Q |
318 |
aaaccaataatgtaagcaacagtacaaggattgagtaggctgataatttgggagaaaacttactcgcccttgcatcttctcttccaatctttttaacgcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37909697 |
aaaccaataatgtaagcaacagtacaaggattgagtaggctgataatttgggagaaaacttactcgcccttgcatcttctcttccaatctttttaacgtc |
37909796 |
T |
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| Q |
418 |
tttg |
421 |
Q |
| |
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|||| |
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|
| T |
37909797 |
tttg |
37909800 |
T |
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